Biomarkers of Diet-microbiota Interactions in Irritable Bowel Syndrome

April 8, 2026 updated by: McMaster University

Most patients suffering from the irritable bowel syndrome (IBS) report that ingestion of certain foods is a major trigger of symptoms, but the reason is unclear. Previous studies have shown that foods containing poorly absorbed carbohydrates (FODMAPs) are fermented by the bacteria in our bowels and these cause symptoms in some but not all patients. Gut bacteria are capable of producing various products, such as neuroimmune mediator histamine, that may be related to IBS symptoms. Our recent data suggest that consumption of FODMAPs promotes production of bacterial histamine.

The main objective of this study is to investigate bacterial production of histamine and its relationship to IBS symptoms. The study will involve 6 weeks on a low-FODMAP diet with three three-day interventions consisting of High- or Low-FODMAP drinks along with probiotics or placebo capsules. The patient's bacteria and metabolites will be analyzed at various time points.

Study Overview

Study Type

Interventional

Enrollment (Actual)

30

Phase

  • Early Phase 1

Contacts and Locations

This section provides the contact details for those conducting the study, and information on where this study is being conducted.

Study Locations

    • Ontario
      • Hamilton, Ontario, Canada, L8N 3Z5
        • McMaster University Medical Centre
      • Kingston, Ontario, Canada, K7L 2V7
        • Kingston Health Sciences Centre

Participation Criteria

Researchers look for people who fit a certain description, called eligibility criteria. Some examples of these criteria are a person's general health condition or prior treatments.

Eligibility Criteria

Ages Eligible for Study

14 years to 71 years (Adult, Older Adult)

Accepts Healthy Volunteers

No

Description

Inclusion Criteria:

  • Adults aged 18-75 with IBS (Rome IV criteria) who have self-reported previous improvement in their IBS symptoms while on a low FODMAP diet, or when excluding certain high-FODMAP foods, or patients in whom histamine is expected to play a key role (either diagnosed with high histamine producing bacteria, or improved IBS symptoms after using antihistamines). Individuals should be able to swallow size 00 capsules.

Exclusion Criteria:

  • Concurrent significant organic GI pathology (i.e. celiac, IBD, etc.)
  • Concurrent systemic disease (such as diabetes) and/or laboratory abnormalities considered by investigators to be risky or that could interfere with data collection
  • History of active cancer in the last 5 years, other than basal cell cancer
  • Pregnant or breastfeeding women
  • Active or recent participation (< 1 month) in a clinical study, except for SPOR IMAGINE
  • Use of antibiotics, probiotics, or ACE inhibitors during, or one month prior to the study
  • Use of new medications less than 4 weeks prior to the study.
  • Allergies to any of the ingredients used in the study
  • Any immune-compromising conditions

Study Plan

This section provides details of the study plan, including how the study is designed and what the study is measuring.

How is the study designed?

Design Details

  • Primary Purpose: Other
  • Allocation: Randomized
  • Interventional Model: Crossover Assignment
  • Masking: Quadruple

Arms and Interventions

Participant Group / Arm
Intervention / Treatment
Experimental: Group A

Participants in group A will undergo challenges in the order:

  1. High-FODMAP beverage + placebo probiotic + L-Histidine
  2. Low-FODMAP beverage + placebo probiotic + L-Histidine
  3. High-FODMAP beverage + probiotic + L-Histidine

Challenges each last 5 days, but the FODMAP drinks and the L-Histidine capsules are only taken for the last three days. There is a 10 day washout period between challenges.

1 capsule (0.6g) twice daily
High-FODMAP beverage (10g of fermentable carbohydrates) consumed twice daily.
Low-FODMAP beverage (10g glucose) consumed twice daily.
Total of 50 billion CFU/capsule taken twice daily.
Other Names:
  • Bio-K+ 50 Billion
Enteric coated capsule with no active ingredient, taken twice daily
Experimental: Group B

Participants in group A will undergo challenges in the order:

  1. Low-FODMAP beverage + placebo probiotic + L-Histidine
  2. High-FODMAP beverage + probiotic + L-Histidine
  3. High-FODMAP beverage + placebo probiotic + L-Histidine.

Challenges each last 5 days, but the FODMAP drinks and the L-Histidine capsules are only taken for the last three days. There is a 10 day washout period between challenges.

1 capsule (0.6g) twice daily
High-FODMAP beverage (10g of fermentable carbohydrates) consumed twice daily.
Low-FODMAP beverage (10g glucose) consumed twice daily.
Total of 50 billion CFU/capsule taken twice daily.
Other Names:
  • Bio-K+ 50 Billion
Enteric coated capsule with no active ingredient, taken twice daily
Experimental: Group C

Participants in group A will undergo challenges in the order:

  1. High-FODMAP beverage + probiotic + L-Histidine
  2. High-FODMAP beverage + placebo probiotic + L-Histidine
  3. Low-FODMAP beverage + placebo probiotic + L-Histidine.

Challenges each last 5 days, but the FODMAP drinks and the L-Histidine capsules are only taken for the last three days. There is a 10 day washout period between challenges.

1 capsule (0.6g) twice daily
High-FODMAP beverage (10g of fermentable carbohydrates) consumed twice daily.
Low-FODMAP beverage (10g glucose) consumed twice daily.
Total of 50 billion CFU/capsule taken twice daily.
Other Names:
  • Bio-K+ 50 Billion
Enteric coated capsule with no active ingredient, taken twice daily

What is the study measuring?

Primary Outcome Measures

Outcome Measure
Measure Description
Time Frame
Metabolites in stool, urine and blood
Time Frame: six weeks
Metabolites will be measured by LC-MS and ELISA at baseline and before and after each intervention.
six weeks

Secondary Outcome Measures

Outcome Measure
Measure Description
Time Frame
Expression of hdc gene by stool bacteria
Time Frame: six weeks
Gram-positive and Gram-negative bacteria will be assessed by PCR using custom designed primers
six weeks
Stool microbiota composition
Time Frame: six weeks
16S rRNA Illumina sequencing of stool samples with culture-enriched sequencing.
six weeks
Worsening of IBS symptoms following High-FODMAP challenge
Time Frame: six weeks
Increase by ≥50 points on IBS Symptom Severity Score (IBS-SSS). The score will be used as a dichotomous variable. The overall score ranges from 0 to 500, with higher scores indicating greater symptom severity.
six weeks
Changes in IBS symptoms
Time Frame: six weeks
IBS-SSS continuous data. The overall score ranges from 0 to 500, with higher scores indicating greater symptom severity.
six weeks
Changes in general GI symptoms
Time Frame: six weeks
Patient-Reported Outcomes Measurement Information System (PROMIS) for general GI symptoms. Four subscales will be used: Gas & Bloating, Diarrhea, Constipation, and Belly Pain. T-scores are calculated using the Scoring Service by Health Measures and range from 34.7 - 79.0 (Gas & Bloating), 39.9 - 75.2 (Diarrhea), 40.6 - 80.8 (Constipation), and 33.9 - 80.0 (Belly Pain). On this scale, 50 indicates the mean of the general population and a difference of 10 is a standard deviation. Higher scores indicate greater symptom severity.
six weeks
Levels of anxiety, depression and stress
Time Frame: six weeks
Depression Anxiety Stress Scale (DASS-21) to assess psychiatric comorbidity and stress. The scale scores range from 0 - 42 with higher scores indicating worse outcomes.
six weeks
Changes in dietary intake
Time Frame: six weeks
5-day food diaries will be completed at 5 time points. FODMAP intake will be quantified using Monash University software and database
six weeks

Collaborators and Investigators

This is where you will find people and organizations involved with this study.

Investigators

  • Principal Investigator: Stephen Vanner, MD, Queens University
  • Principal Investigator: Premysl Bercik, MD, McMaster University

Study record dates

These dates track the progress of study record and summary results submissions to ClinicalTrials.gov. Study records and reported results are reviewed by the National Library of Medicine (NLM) to make sure they meet specific quality control standards before being posted on the public website.

Study Major Dates

Study Start (Actual)

July 15, 2021

Primary Completion (Actual)

February 10, 2026

Study Completion (Actual)

February 10, 2026

Study Registration Dates

First Submitted

April 23, 2020

First Submitted That Met QC Criteria

April 23, 2020

First Posted (Actual)

April 28, 2020

Study Record Updates

Last Update Posted (Actual)

April 13, 2026

Last Update Submitted That Met QC Criteria

April 8, 2026

Last Verified

April 1, 2026

More Information

Terms related to this study

Plan for Individual participant data (IPD)

Plan to Share Individual Participant Data (IPD)?

NO

Drug and device information, study documents

Studies a U.S. FDA-regulated drug product

No

Studies a U.S. FDA-regulated device product

No

This information was retrieved directly from the website clinicaltrials.gov without any changes. If you have any requests to change, remove or update your study details, please contact register@clinicaltrials.gov. As soon as a change is implemented on clinicaltrials.gov, this will be updated automatically on our website as well.

Subscribe