Progression of COVID-19 From Urban to Rural Areas in the United States: A Spatiotemporal Analysis of Prevalence Rates

Rajib Paul, Ahmed A Arif, Oluwaseun Adeyemi, Subhanwita Ghosh, Dan Han, Rajib Paul, Ahmed A Arif, Oluwaseun Adeyemi, Subhanwita Ghosh, Dan Han

Abstract

Purpose: There are growing signs that the COVID-19 virus has started to spread to rural areas and can impact the rural health care system that is already stretched and lacks resources. To aid in the legislative decision process and proper channelizing of resources, we estimated and compared the county-level change in prevalence rates of COVID-19 by rural-urban status over 3 weeks. Additionally, we identified hotspots based on estimated prevalence rates.

Methods: We used crowdsourced data on COVID-19 and linked them to county-level demographics, smoking rates, and chronic diseases. We fitted a Bayesian hierarchical spatiotemporal model using the Markov Chain Monte Carlo algorithm in R-studio. We mapped the estimated prevalence rates using ArcGIS 10.8, and identified hotspots using Gettis-Ord local statistics.

Findings: In the rural counties, the mean prevalence of COVID-19 increased from 3.6 per 100,000 population to 43.6 per 100,000 within 3 weeks from April 3 to April 22, 2020. In the urban counties, the median prevalence of COVID-19 increased from 10.1 per 100,000 population to 107.6 per 100,000 within the same period. The COVID-19 adjusted prevalence rates in rural counties were substantially elevated in counties with higher black populations, smoking rates, and obesity rates. Counties with high rates of people aged 25-49 years had increased COVID-19 prevalence rates.

Conclusions: Our findings show a rapid spread of COVID-19 across urban and rural areas in 21 days. Studies based on quality data are needed to explain further the role of social determinants of health on COVID-19 prevalence.

Keywords: Bayesian influence; disease hotspots; geographic disparity; pandemic; respiratory disease.

© 2020 National Rural Health Association.

Figures

Figure 1
Figure 1
Median Prevalence Trend of COVID‐19 Infection From the Observed Data Before Denoising. The triangles represent urban median prevalence rates and the circles represent rural median prevalence rates.
Figure 2
Figure 2
Estimated (Denoised) Prevalence Rates From Fitted Spatiotemporal Model for (a) Rural and (b) Urban Counties. The black lines indicate median prevalence rates. Gray lines represent prevalence curves for 2,107 rural and 1,001 urban counties. Square root of rates are plotted for better comparison. The red line in plot (a) denotes the prevalence for Plaquemines Parish, Louisiana. The red line in plot (b) denotes the prevalence for New York City and the green line indicates the prevalence plot for New Orleans, Louisiana.
Figure 3
Figure 3
Estimated COVID‐19 (Denoised) Prevalence per 100,000 Population From the Fitted Spatiotemporal Model: April 3 to April 22, 2020.
Figure 4
Figure 4
Hotspots of COVID‐19 Estimated (Denoised) Prevalence: April 3 to April 22, 2020.
Figure 5
Figure 5
Significant Increase or Decrease of Percentage Change in Prevalence Over a 14‐Day Period.

References

    1. World Health Organization. Coronavirus disease 2019 (COVID‐19) situation report—97. 2020; Accessed May 7, 2020.
    1. Centers for Disease Control and Prevention . Severe outcomes among patients with coronavirus disease 2019 (COVID‐19)—United States, February 12‐March 16, 2020. MMWR Morb Mortal Wkly Rep. 2020;69(12):343‐346.
    1. Centers for Disease Control and Prevention. Cases of Coronavirus Disease (COVID‐19) in the U.S. 2020; . Accessed April 26, 2020.
    1. Tian H, Liu Y, Li Y, Wu CH, Chen B, Kraemer MU, … Wang B. An investigation of transmission control measures during the first 50 days of the COVID‐19 epidemic in China. Science. 2020;368(6491):638‐642.
    1. Centers for Disease Control and Prevention. About Rural Health. 2017; . Accessed April 3, 2020, 2020.
    1. Atkins GT, Kim T, Munson J. Residence in rural areas of the United States and lung cancer mortality. Disease incidence, treatment disparities, and stage‐specific survival. Ann Am Thorac Soc. 2017;14(3):403‐411.
    1. Moy E, Garcia MC, Bastian B, et al. Leading causes of death in nonmetropolitan and metropolitan areas—United States, 1999–2014. MMWR Surveill Summ. 2017;66(1):1‐8.
    1. New‐York‐Times . Coronavirus was slow to spread to Rural America. Not anymore; . Accessed April 10, 2020.
    1. Healy J, Tavernise S, Gebeloff R, Cai W. Coronavirus was slow to spread to rural America. Not anymore. The New York Times. April 8, 2020.
    1. American Academy of Pediatric News . CDC offers COVID‐19 guidance to rural communities. 2020; . Accessed April 4, 2020.
    1. Miller IF, Becker AD, Grenfell BT, Metcalf CJE. Mapping the burden of COVID‐19 in the United States. medRxiv. 2020. 10.1101/2020.04.05.20054700.
    1. Sahu SK, Bakar KS. Hierarchical Bayesian auto‐regressive models for large space time data with applications to ozone concentration modelling by Sujit Kumar Sahu and Khandoker Shuvo Bakar: rejoinder. Appl Stochast Models Bus Indus. 2012;28(5):418‐419.
    1. Cressie N, Wikle CK. Statistics for Spatiotemporal Data. New York: John Wiley & Sons; 2015.
    1. Cressie N. Statistics for Spatial Data. New York: John Wiley & Sons; 1991.
    1. United States Census Bureau. 2018 FIPS Codes. 2019; . Accessed April 11, 2020.
    1. Center for Systems Science and Engineering . Novel Coronavirus (COVID‐19) Cases, provided by JHU CSSE. 2020; . Accessed May 8, 2020.
    1. WHO Director‐General's opening remarks at the media briefing on COVID‐19. 24 February 2020; . Accessed May 7, 2020.
    1. United States Census Bureau. 2018 American Community Survey Summary File Data. 2018; . Accessed May 7, 2020.
    1. University of Wisconsin Population Health Institute. 2020 County Health Rankings State Reports. County Health Ranking and Road Maps. 2020; . Accessed April 11, 2020.
    1. Economic Research Services. Rural‐Urban Commuting Area Codes. 2019; . Accessed April 11, 2020.
    1. Sigrist F, Künsch HR, Stahel WA. Stochastic partial differential equation based modelling of large spacetime data sets. Journal of the Royal Statistical Society: Series B (Statistical Methodology). 2015;77(1):3‐33.
    1. Paul R, Jelsema CM, Lau KW. A flexible class of reduced rank spatial models for large non‐gaussian dataset, peer reviewed book chapter on “Current Trends in Bayesian Methodology with Applications”. edited jointly by Satyanshu K. Upadhyay, Umesh Singh, Dipak K. Dey, and Appaia Loganathan, (pp. 477‐502), published by Chapman and Hall/CRC, New York; 2015.
    1. Robert C, Casella G. Monte Carlo Statistical Methods. Monte Carlo statistical methods. Springer Science & Business Media; 2013. New York.
    1. RStudio: Integrated Development for R. [computer program]. Boston, MA: RStudio, Inc.; 2019.
    1. R: A language and environment for statistical computing [computer program]. Vienna, Austria: R Foundation for Statistical Computing; 2019.
    1. Bakar KS, Sahu SK. spTimer: spatiotemporal Bayesian modelling using R. J Stat Softw. 2015;63(15):1‐32.
    1. Sigrist F, Künsch HR, Stahel WA. A dynamic nonstationary spatiotemporal model for short term prediction of precipitation. Ann Appl Stat. 2012;6(4):1452‐1477.
    1. ArcGIS Desktop: Release [computer program] . Version 10.8. Redlands, CA: Environmental Systems Research Institute; 2020.
    1. Getis A, Ord JK. The analysis of spatial association by use of distance statistics. In Perspectives on Spatial Data Analysis. edited by Anselin, Luc, Rey, Sergio J. (pp. 127‐145). Springer, Berlin, Heidelberg. 2010.
    1. CDC COVID‐19 Response Team . Geographic differences in COVID‐19 cases, deaths, and incidence—United States, February 12‐April 7, 2020. MMWR Morb Mortal Wkly Rep. 2020;69(15):465‐471.
    1. Fehr R, Kates J, Cox C, Michaud J. COVID‐19 in rural America—is there cause for concern? 2020. . Accessed May 7, 2020.
    1. Zahnd WE. The COVID‐19 pandemic illuminates persistent and emerging disparities among rural black populations. J Rural Health. Epub ahead of print, May 3, 2020. 10.1111/jrh.12460
    1. Sood L, Sood V. Being African American and rural: a double jeopardy from Covid‐19. J Rural Health. Epub ahead of print June 8, 2020. 10.1111/jrh.12459.
    1. Rios E, Rangarajan S. COVID‐19 has infected and killed black people at alarming rates. This data proves it. Mother Jones. April 17, 2020.
    1. Thebault R, Tran AB, Williams V. The coronavirus is infecting and killing black Americans at an alarmingly high rate. The Washington Post. April 8, 2020.
    1. Black Demographics. African American employment. The African American Population 2020; . Accessed May 7, 2020.
    1. Center for Disease Control and Prevention. Current cigarette smoking among adults in the United States. Smoking & Tobacco Use. 2019; . Accessed May 7, 2020.
    1. Farsalinos K, Niaura R, Le Houezec J, et al. Editorial: nicotine and SARS‐CoV‐2: COVID‐19 may be a disease of the nicotinic cholinergic system. Toxicol Rep. 2020;7:658‐663.
    1. Hales CM, Carroll MD, Fryar CD, Ogden CL. Prevalence of obesity and severe obesity among adults: United States, 2017–2018. NCHS Data Brief. 2017 Oct;(288):1‐8.
    1. Centers for Disease Control and Prevention. Estimates of diabetes and its burden in the United States. National Diabetes Statistics Report. 2020. . Accessed May 7, 2020.
    1. Moser J‐AS, Galindo‐Fraga A, Ortiz‐Hernández AA, et al. Underweight, overweight, and obesity as independent risk factors for hospitalization in adults and children from influenza and other respiratory viruses. Influenza Other Respir Viruses. 2019;13(1):3‐9.
    1. Campitelli MA, Rosella LC, Kwong JC. The association between obesity and outpatient visits for acute respiratory infections in Ontario, Canada. Int J Obes (Lond). 2014;38(1):113‐119.
    1. Klekotka RB, Mizgała E, Król W. The etiology of lower respiratory tract infections in people with diabetes. Pneumonol i Alerg Polska. 2015;83(5):401‐408.
    1. Stegenga ME, Vincent J‐L, Vail GM, et al. Diabetes does not alter mortality or hemostatic and inflammatory responses in patients with severe sepsis. Crit Care Med. 2010;38(2):539‐545.
    1. Guo W, Li M, Dong Y, et al. Diabetes is a risk factor for the progression and prognosis of COVID‐19. Diab/Metab Res Rev. 2020;e3319. 10.1002/dmrr.3319
    1. Madsbad S. COVID‐19 infection in people with diabetes. Touch Endocrinology. 2020. . Accessed June 10, 2020.
    1. Bloomgarden ZT. Diabetes and COVID‐19. J Diab. 2020;12(4):347‐348.
    1. Hussain A, Bhowmik B, do Vale Moreira NC. COVID‐19 and diabetes: knowledge in progress. Diab Res Clin Pract. 2020;162:108142.
    1. Muniyappa R, Gubbi S. COVID‐19 pandemic, coronaviruses, and diabetes mellitus. Am J Physiol Endocrinol Metab. 2020;318(5):E736‐e741.
    1. Selvin E, Parrinello CM. Age‐related differences in glycaemic control in diabetes. Diabetologia. 2013;56(12):2549‐2551.
    1. Nesteruk I. Estimations of the coronavirus epidemic dynamics in South Korea with the use of SIR model. Preprint, ResearchGate. 2020. 10.13140/RG.2.2.15489.40807
    1. Peng L, Yang W, Zhang D, Zhuge C, Hong L. Epidemic analysis of COVID‐19 in China by dynamical modeling. arXiv 2020. 10.1101/2020.02.16.20023465
    1. Centers for Disease Control and Prevention. COVID‐19 Forecasts. Coronavirus Disease 2019 (COVID‐19) 2020; . Accessed May 7, 2020.
    1. COVID IHME , Murray CJ. Forecasting COVID‐19 impact on hospital bed‐days, ICU‐days, ventilator‐days and deaths by US state in the next 4 months. MedRxiv. 2020.
    1. Ver Hoef JM, Cressie N, Barry RP. Flexible spatial models for kriging and cokriging using moving averages and the Fast Fourier Transform (FFT). J Comput Graph Stat. 2004;13(2):265‐282.
    1. Banerjee S, Gelfand AE, Finley AO, Sang H. Gaussian predictive process models for large spatial data sets. J R Stat Soc: Ser B (Stat Meth). 2008;70(4):825‐848.
    1. Omori R, Mizumoto K, Chowell G. Changes in testing rates could mask the novel coronavirus disease (COVID‐19) growth rate. Int J Infect Dis. 2020;94:116‐118.

Source: PubMed

3
Subscribe