Analysis of Preventive Interventions for Malaria: Exploring Partial and Complete Protection and Total and Primary Intervention Effects

Matthew Cairns, Yin Bun Cheung, Ying Xu, Kwaku Poku Asante, Seth Owusu-Agyei, Diadier Diallo, Amadou T Konate, Alassane Dicko, Daniel Chandramohan, Brian Greenwood, Paul Milligan, Matthew Cairns, Yin Bun Cheung, Ying Xu, Kwaku Poku Asante, Seth Owusu-Agyei, Diadier Diallo, Amadou T Konate, Alassane Dicko, Daniel Chandramohan, Brian Greenwood, Paul Milligan

Abstract

Event dependence, the phenomenon in which future risk depends on past disease history, is not commonly accounted for in the statistical models used by malaria researchers. However, recently developed methods for the analysis of repeated events allow this to be done, while also accounting for heterogeneity in risk and nonsusceptible subgroups. Accounting for event dependence allows separation of the primary effect of an intervention from its total effect, which is composed of its primary effect on risk of disease and its secondary effect mediated by event dependence. To illustrate these methods and show the insights they can provide, we have reanalyzed 2 trials of seasonal malaria chemoprevention (SMC) in Boussé, Burkina Faso, and Kati, Mali, in 2008-2009, as well as a trial of intermittent preventive treatment of malaria in infants in Navrongo, Ghana, in 2000-2004. SMC completely protects a large fraction of recipients, while intermittent preventive treatment in infants provides modest partial protection, consistent with the rationale of these 2 different chemopreventive approaches. SMC has a primary effect that is substantially greater than the total effect previously estimated by trials, with the lower total effect mediated by negative event dependence. These methods contribute to an understanding of the mechanisms of protection from these interventions and could improve understanding of other tools to control malaria, including vaccines.

Keywords: cure models; event dependence; heterogeneity; malaria; repeated events.

© The Author 2015. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health.

Figures

Figure 1.
Figure 1.
Kaplan-Meier survival plots for data from A) Boussé, Burkina Faso, 2008–2009; B) Kati, Mali, 2008–2009; and C) Navrongo, Ghana, 2000–2004.
Figure 2.
Figure 2.
Nelson-Aalen cumulative hazard plots for data from A) Boussé, Burkina Faso, 2008–2009; B) Kati, Mali, 2008–2009; and C) Navrongo, Ghana, 2000–2004.

References

    1. Lloyd-Smith JO. Maximum likelihood estimation of the negative binomial dispersion parameter for highly overdispersed data, with applications to infectious diseases. PLoS One. 2007;22:e180.
    1. Woolhouse ME, Dye C, Etard JF, et al. Heterogeneities in the transmission of infectious agents: implications for the design of control programs. Proc Natl Acad Sci U S A. 1997;941:338–342.
    1. Cairns ME, Asante KP, Owusu-Agyei S, et al. Analysis of partial and complete protection in malaria cohort studies. Malar J. 2013;12:355.
    1. Kreuels B, Kobbe R, Adjei S, et al. Spatial variation of malaria incidence in young children from a geographically homogeneous area with high endemicity. J Infect Dis. 2008;1971:85–93.
    1. Mwangi TW, Fegan G, Williams TN, et al. Evidence for over-dispersion in the distribution of clinical malaria episodes in children. PLoS One. 2008;35:e2196.
    1. Bousema T, Drakeley C, Gesase S, et al. Identification of hot spots of malaria transmission for targeted malaria control. J Infect Dis. 2010;20111:1764–1774.
    1. Bejon P, Williams TN, Liljander A, et al. Stable and unstable malaria hotspots in longitudinal cohort studies in Kenya. PLoS Med. 2010;77:e1000304.
    1. Xu Y, Lam KF, Cheung YB. Estimation of intervention effects using recurrent event time data in the presence of event dependence and a cured fraction. Stat Med. 2014;3313:2263–2274.
    1. Smith PG, Rodrigues LC, Fine PE. Assessment of the protective efficacy of vaccines against common diseases using case-control and cohort studies. Int J Epidemiol. 1984;131:87–93.
    1. Duncan CJA, Hill AV. Re: “What is the efficacy of RTS,S?” [letter] BMJ. 2011;343:d7728.
    1. Butler D. Malaria vaccine results face scrutiny. Nature. 2011;4787370:439–440.
    1. White NJ. How antimalarial drug resistance affects post-treatment prophylaxis. Malar J. 2008;7:9.
    1. Smith T, Felger I, Tanner M, et al. Premunition in Plasmodium falciparum infection: insights from the epidemiology of multiple infections. Trans R Soc Trop Med Hyg. 1999;93(suppl 1):59–64.
    1. Achtman AH, Bull PC, Stephens R, et al. Longevity of the immune response and memory to blood-stage malaria infection. Curr Top Microbiol Immunol. 2005;297:71–102.
    1. Baird JK, Owusu Agyei S, Utz GC, et al. Seasonal malaria attack rates in infants and young children in northern Ghana. Am J Trop Med Hyg. 2002;663:280–286.
    1. Gupta S, Snow RW, Donnelly CA, et al. Immunity to non-cerebral severe malaria is acquired after one or two infections. Nat Med. 1999;53:340–343.
    1. Langhorne J, Ndungu FM, Sponaas AM, et al. Immunity to malaria: more questions than answers. Nat Immunol. 2008;97:725–732.
    1. Filipe JA, Riley EM, Drakeley CJ, et al. Determination of the processes driving the acquisition of immunity to malaria using a mathematical transmission model. PLoS Comput Biol. 2007;312:e255.
    1. Cheung YB, Xu Y, Tan SH, et al. Estimation of intervention effects using first or multiple episodes in clinical trials: the Andersen-Gill model re-examined. Stat Med. 2010;293:328–336.
    1. Box-Steffensmeier JM, De Boef S. Repeated events survival models: the conditional frailty model. Stat Med. 2006;2520:3518–3533.
    1. Xu Y, Cheung YB, Lam KF, et al. Estimation of summary protective efficacy using a frailty mixture model for recurrent event time data. Stat Med. 2012;3129:4023–4039.
    1. Konate AT, Yaro JB, Ouédraogo AZ, et al. Intermittent preventive treatment of malaria provides substantial protection against malaria in children already protected by an insecticide-treated bednet in Burkina Faso: a randomised, double-blind, placebo-controlled trial. PLoS Med. 2011;82:e1000408.
    1. Dicko A, Diallo AI, Tembine I, et al. Intermittent preventive treatment of malaria provides substantial protection against malaria in children already protected by an insecticide-treated bednet in Mali: a randomised, double-blind, placebo-controlled trial. PLoS Med. 2011;82:e1000407.
    1. Chandramohan D, Owusu-Agyei S, Carneiro I, et al. Cluster randomised trial of intermittent preventive treatment for malaria in infants in area of high, seasonal transmission in Ghana. BMJ. 2005;3317519:727–733.
    1. Xu Y, Cheung YB. Frailty models and frailty-mixture models for recurrent event times. Stata J. 2015;151:135–154.
    1. Louis TA. Finding the observed information matrix when using the EM algorithm. J R Stat Soc Series B. 1982;44:226–233.
    1. World Health Organization. WHO Policy Recommendation: Seasonal Malaria Chemoprevention (SMC) for Plasmodium falciparum Malaria Control in Highly Seasonal Transmission Areas of the Sahel Sub-Region in Africa. Geneva, Switzerland: World Health Organization; Geneva, Switzerland: World Health Organization; 2012.
    1. Konaté AT, Yaro JB, Ouédraogo AZ, et al. Morbidity from malaria in children in the year after they had received intermittent preventive treatment of malaria: a randomised trial. PLoS One. 2011;68:e23391.
    1. Dicko A, Barry A, Dicko M, et al. Malaria morbidity in children in the year after they had received intermittent preventive treatment of malaria in Mali: a randomized control trial. PLoS One. 2011;68:e23390.
    1. Sutherland CJ, Drakeley CJ, Schellenberg D. How is childhood development of immunity to Plasmodium falciparum enhanced by certain antimalarial interventions? Malar J. 2007;6:161.
    1. Schellenberg D, Menendez C, Aponte JJ, et al. Intermittent preventive antimalarial treatment for Tanzanian infants: follow-up to age 2 years of a randomised, placebo-controlled trial. Lancet. 2005;3659469:1481–1483.
    1. Aponte JJ, Menendez C, Schellenberg D, et al. Age interactions in the development of naturally acquired immunity to Plasmodium falciparum and its clinical presentation. PLoS Med. 2007;47:e242.
    1. Allison PD. Survival Analysis Using SAS: A Practical Guide. 2nd ed Cary, NC: SAS Institute, Inc; 2010.
    1. Spiegelman D, Hertzmark E. The authors reply (Re: “Easy SAS calculations for risk or prevalence ratios and differences”) [letter]. Am J Epidemiol. 2006;16312:1159–1161.
    1. Peña EA. Dynamic modeling and statistical analysis of event times. Stat Sci. 2006;214:487–500.

Source: PubMed

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