The effect of control strategies to reduce social mixing on outcomes of the COVID-19 epidemic in Wuhan, China: a modelling study

Kiesha Prem, Yang Liu, Timothy W Russell, Adam J Kucharski, Rosalind M Eggo, Nicholas Davies, Centre for the Mathematical Modelling of Infectious Diseases COVID-19 Working Group, Mark Jit, Petra Klepac, Stefan Flasche, Samuel Clifford, Carl A B Pearson, James D Munday, Sam Abbott, Hamish Gibbs, Alicia Rosello, Billy J Quilty, Thibaut Jombart, Fiona Sun, Charlie Diamond, Amy Gimma, Kevin van Zandvoort, Sebastian Funk, Christopher I Jarvis, W John Edmunds, Nikos I Bosse, Joel Hellewell, Kiesha Prem, Yang Liu, Timothy W Russell, Adam J Kucharski, Rosalind M Eggo, Nicholas Davies, Centre for the Mathematical Modelling of Infectious Diseases COVID-19 Working Group, Mark Jit, Petra Klepac, Stefan Flasche, Samuel Clifford, Carl A B Pearson, James D Munday, Sam Abbott, Hamish Gibbs, Alicia Rosello, Billy J Quilty, Thibaut Jombart, Fiona Sun, Charlie Diamond, Amy Gimma, Kevin van Zandvoort, Sebastian Funk, Christopher I Jarvis, W John Edmunds, Nikos I Bosse, Joel Hellewell

Abstract

Background: In December, 2019, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), a novel coronavirus, emerged in Wuhan, China. Since then, the city of Wuhan has taken unprecedented measures in response to the outbreak, including extended school and workplace closures. We aimed to estimate the effects of physical distancing measures on the progression of the COVID-19 epidemic, hoping to provide some insights for the rest of the world.

Methods: To examine how changes in population mixing have affected outbreak progression in Wuhan, we used synthetic location-specific contact patterns in Wuhan and adapted these in the presence of school closures, extended workplace closures, and a reduction in mixing in the general community. Using these matrices and the latest estimates of the epidemiological parameters of the Wuhan outbreak, we simulated the ongoing trajectory of an outbreak in Wuhan using an age-structured susceptible-exposed-infected-removed (SEIR) model for several physical distancing measures. We fitted the latest estimates of epidemic parameters from a transmission model to data on local and internationally exported cases from Wuhan in an age-structured epidemic framework and investigated the age distribution of cases. We also simulated lifting of the control measures by allowing people to return to work in a phased-in way and looked at the effects of returning to work at different stages of the underlying outbreak (at the beginning of March or April).

Findings: Our projections show that physical distancing measures were most effective if the staggered return to work was at the beginning of April; this reduced the median number of infections by more than 92% (IQR 66-97) and 24% (13-90) in mid-2020 and end-2020, respectively. There are benefits to sustaining these measures until April in terms of delaying and reducing the height of the peak, median epidemic size at end-2020, and affording health-care systems more time to expand and respond. However, the modelled effects of physical distancing measures vary by the duration of infectiousness and the role school children have in the epidemic.

Interpretation: Restrictions on activities in Wuhan, if maintained until April, would probably help to delay the epidemic peak. Our projections suggest that premature and sudden lifting of interventions could lead to an earlier secondary peak, which could be flattened by relaxing the interventions gradually. However, there are limitations to our analysis, including large uncertainties around estimates of R0 and the duration of infectiousness.

Funding: Bill & Melinda Gates Foundation, National Institute for Health Research, Wellcome Trust, and Health Data Research UK.

Copyright © 2020 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY 4.0 license. Published by Elsevier Ltd.. All rights reserved.

Figures

Figure 1
Figure 1
Age-structured SEIR model and details of the modelled physical distancing interventions According to infection status, we divided the population into susceptible (S), exposed (E), infected (I), and removed (R) individuals. An infected individual in an age group can be clinical (Ic) or subclinical (Isc), and ρi refers to the probability that an individual is symptomatic or clinical. The age-specific mixing patterns of individuals in age group i, Ci,j, alter their likelihood of being exposed to the virus given a certain number of infected individuals in the population. Younger individuals are more likely to be asymptomatic and less infectious, ie, subclinical. When ρi=0 for all i, the model simplifies to a standard SEIR. The force of infection φi,t is given by 1–(βΣjCi,jICj,t+αβΣjCi,jISCj,t), where β is the transmission rate and α is the proportion of transmission that resulted from a subclinical individual. SEIR= susceptible-exposed-infected-removed.
Figure 2
Figure 2
Synthetic age-specific and location-specific contact matrices for China under various physical distancing scenarios during the intense control period for China Synthetic age-specific contact patterns across all locations, at home, in the workplace, in school, and at other locations during normal circumstances (ie, under no intervention) are presented in panels A to E. Age-specific and location-specific contact matrices under the various physical distancing interventions are presented in panels F to T. Darker colour intensities indicate higher proclivity of making the age-specific contact.
Figure 3
Figure 3
Effects of different intervention strategies on cumulative incidence and new cases per day among individuals aged 55 to

Figure 4

Effects of different physical distancing…

Figure 4

Effects of different physical distancing measures on cumulative incidence (A) and new cases…

Figure 4
Effects of different physical distancing measures on cumulative incidence (A) and new cases per day (B), and age-specific incidence per day (C to G) from late 2019 to end-2020 Results depicted here assume an infectious period of 7 days. Median cumulative incidence, incident cases per day, and age-specific incidence per day are represented as solid lines. Shaded areas around the coloured lines in panel A represent the IQR.

Figure 5

Modelled proportion of number of…

Figure 5

Modelled proportion of number of infections averted by end-2020 by age for different…

Figure 5
Modelled proportion of number of infections averted by end-2020 by age for different physical distancing measures, assuming the duration of infectiousness to be 3 days (A, B) or 7 days (C, D) The additional proportions of cases averted (compared with no intervention) are presented across age and by the different physical distancing measures.
Figure 4
Figure 4
Effects of different physical distancing measures on cumulative incidence (A) and new cases per day (B), and age-specific incidence per day (C to G) from late 2019 to end-2020 Results depicted here assume an infectious period of 7 days. Median cumulative incidence, incident cases per day, and age-specific incidence per day are represented as solid lines. Shaded areas around the coloured lines in panel A represent the IQR.
Figure 5
Figure 5
Modelled proportion of number of infections averted by end-2020 by age for different physical distancing measures, assuming the duration of infectiousness to be 3 days (A, B) or 7 days (C, D) The additional proportions of cases averted (compared with no intervention) are presented across age and by the different physical distancing measures.

References

    1. Li Q, Guan X, Wu P. Early transmission dynamics in Wuhan, China, of novel coronavirus-infected pneumonia. N Engl J Med. 2020 doi: 10.1056/NEJMoa2001316. published online Jan 29.
    1. Zhu N, Zhang D, Wang W. A novel coronavirus from patients with pneumonia in China, 2019. N Engl J Med. 2020 doi: 10.1056/NEJMoa2001017. published Feb 20.
    1. Chen S, Yang J, Yang W, Wang C, Bärnighausen T. COVID-19 control in China during mass population movements at New Year. Lancet. 2020;395:764–766.
    1. Fong MW, Gao H, Wong JY. Nonpharmaceutical measures for pandemic influenza in nonhealthcare settings—social distancing measures. Emerg Infect Dis. 2020 doi: 10.3201/eid2605.190995. published online Feb 6.
    1. Hens N, Ayele GM, Goeyvaerts N. Estimating the impact of school closure on social mixing behaviour and the transmission of close contact infections in eight European countries. BMC Infect Dis. 2009;9:187.
    1. Ahmed F, Zviedrite N, Uzicanin A. Effectiveness of workplace social distancing measures in reducing influenza transmission: a systematic review. BMC Public Health. 2018;18:518.
    1. Quilty BJ, Clifford S, Flasche S, Eggo RM. Effectiveness of airport screening at detecting travellers infected with novel coronavirus (2019-nCoV) Euro Surveill. 2020;25
    1. Tian H, Li Y, Liu Y. Early evaluation of the Wuhan City travel restrictions in response to the 2019 novel coronavirus outbreak. medRxiv. 2020 doi: 10.1101/2020.01.30.20019844. published online Jan 30. (preprint).
    1. Riou J, Althaus CL. Pattern of early human-to-human transmission of Wuhan 2019 novel coronavirus (2019-nCoV), December 2019 to January 2020. Euro Surveill. 2020;25
    1. Chan JFW, Yuan S, Kok KH. A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster. Lancet. 2020;395:514–523.
    1. Mossong J, Hens N, Jit M. Social contacts and mixing patterns relevant to the spread of infectious diseases. PLoS Med. 2008;5:e74.
    1. Zhang J, Klepac P, Read JM. Patterns of human social contact and contact with animals in Shanghai, China. Sci Rep. 2019;9
    1. Prem K, Cook AR, Jit M. Projecting social contact matrices in 152 countries using contact surveys and demographic data. PLOS Comput Biol. 2017;13
    1. Kucharski AJ, Russell TW, Diamond C. Early dynamics of transmission and control of COVID-19: a mathematical modelling study. Lancet Infect Dis. 2020 doi: 10.1016/S1473-3099(20)30144-4. published online March 11.
    1. Abbott S, Hellewell J, Munday J, Funk S. The transmissibility of novel Coronavirus in the early stages of the 2019–20 outbreak in Wuhan: exploring initial point-source exposure sizes and durations using scenario analysis. Wellcome Open Res. 2020;5:17.
    1. Backer JA, Klinkenberg D, Wallinga J. Incubation period of 2019 novel coronavirus (2019-nCoV) infections among travellers from Wuhan, China, 20–28 January 2020. Euro Surveill. 2020;25
    1. Klepac P, Pomeroy LW, Bjørnstad ON, Kuiken T, Osterhaus ADME, Rijks JM. Stage-structured transmission of phocine distemper virus in the Dutch 2002 outbreak. Proc Biol Sci. 2009;276:2469–2476.
    1. Klepac P, Caswell H. The stage-structured epidemic: linking disease and demography with a multi-state matrix approach model. Theor Ecol. 2011;4:301–319.
    1. Liu Y, Funk S, Flasche S. The contribution of pre-symptomatic transmission to the COVID-19 outbreak. Centre for Mathematical Modelling of Infectious Disease Repository.
    1. Bi Q, Wu Y, Mei S. Epidemiology and transmission of COVID-19 in Shenzhen China: analysis of 391 cases and 1286 of their close contacts. medRxiv. 2020 doi: 10.1101/2020.03.03.20028423. published online March 3. (preprint).
    1. Davies N. nicholasdavies/ncov-age-dist.
    1. Woelfel R, Corman VM, Guggemos W. Clinical presentation and virological assessment of hospitalized cases of coronavirus disease 2019 in a travel-associated transmission cluster. medRxiv. 2020 doi: 10.1101/2020.03.05.20030502. published online March 5. (preprint).
    1. Zhao LY, Li AQ. Zhezhou City strategy for resuming work and production among business enterprises. Feb 13, 2020.
    1. Sohu News Academic calendar for elementary and middle school in Wuhan. 2019.
    1. Riley S, Fraser C, Donnelly CA. Transmission dynamics of the etiological agent of SARS in Hong Kong: impact of public health interventions. Science. 2003;300:1961–1966.
    1. Ferguson NM, Keeling MJ, Edmunds WJ. Planning for smallpox outbreaks. Nature. 2003;425:681–685.
    1. Wallinga J, Teunis P, Kretzschmar M. Using data on social contacts to estimate age-specific transmission parameters for respiratory-spread infectious agents. Am J Epidemiol. 2006;164:936–944.
    1. Read JM, Keeling MJ. Disease evolution on networks: the role of contact structure. Proc Biol Sci. 2003;270:699–708.
    1. Hilton J, Keeling MJ. Incorporating household structure and demography into models of endemic disease. J R Soc Interface. 2019;16
    1. Wallinga J, Edmunds WJJ, Kretzschmar M. Perspective: human contact patterns and the spread of airborne infectious diseases. Trends Microbiol. 1999;7:372–377.
    1. Edmunds WJ, O'Callaghan CJ, Nokes DJ. Who mixes with whom? A method to determine the contact patterns of adults that may lead to the spread of airborne infections. Proc Biol Sci. 1997;264:949–957.
    1. Cate TR. Clinical manifestations and consequences of influenza. Am J Med. 1987;82:15–19.
    1. Falsey AR, Erdman D, Anderson LJ, Walsh EE. Human metapneumovirus infections in young and elderly adults. J Infect Dis. 2003;187:785–790.
    1. WHO Report of the WHO-China Joint Mission on Coronavirus Disease 2019 (COVID-19) 16–24 Feb, 2020.
    1. Eubank S, Guclu H, Kumar VS. Modelling disease outbreaks in realistic urban social networks. Nature. 2004;429:180–184.
    1. Stehlé J, Voirin N, Barrat A. Simulation of an SEIR infectious disease model on the dynamic contact network of conference attendees. BMC Med. 2011;9:87.
    1. Potter GE, Handcock MS, Longini IM, Jr, Halloran ME. Estimating within-household contact networks from egocentric data. Ann Appl Stat. 2011;5:1816–1838.
    1. Cowling BJ, Lim WW. They've contained the coronavirus. Here's how. New York Times. 2020
    1. Wilder-Smith A, Chiew CJ, Lee VJ. Can we contain the COVID-19 outbreak with the same measures as for SARS? Lancet Infect Dis. 2020 doi: 10.1016/S1473-3099(20)30129-8. published online March 5.
    1. Luo W, Majumder MS, Liu D. The role of absolute humidity on transmission rates of the COVID-19 outbreak. medRxiv. 2020 doi: 10.1101/2020.02.12.20022467. published online February 17. (preprint).
    1. Lipsitch M. Seasonality of SARS-CoV-2: Will COVID-19 go away on its own in warmer weather? Center for Communicable Disease Dynamics. 2020.
    1. Safety and immunogenicity study of 2019-nCoV vaccine (mRNA-1273) to prevent SARS-CoV-2 infection. 2020.
    1. Yao X, Ye F, Zhang M. In vitro antiviral activity and projection of optimized dosing design of hydroxychloroquine for the treatment of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Clin Infect Dis. 2020 doi: 10.1093/cid/ciaa237. published online March 9.
    1. Brooks SK, Webster RK, Smith LE. The psychological impact of quarantine and how to reduce it: rapid review of the evidence. Lancet. 2020;395:912–920.
    1. Wu JT, Leung K, Leung GM. Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study. Lancet. 2020;395:689–697.

Source: PubMed

3
Iratkozz fel