Development and validation of a metabolite score for red meat intake: an observational cohort study and randomized controlled dietary intervention

Chunxiao Li, Fumiaki Imamura, Roland Wedekind, Isobel D Stewart, Maik Pietzner, Eleanor Wheeler, Nita G Forouhi, Claudia Langenberg, Augustin Scalbert, Nicholas J Wareham, Chunxiao Li, Fumiaki Imamura, Roland Wedekind, Isobel D Stewart, Maik Pietzner, Eleanor Wheeler, Nita G Forouhi, Claudia Langenberg, Augustin Scalbert, Nicholas J Wareham

Abstract

Background: Self-reported meat consumption is associated with disease risk but objective assessment of different dimensions of this heterogeneous dietary exposure in observational and interventional studies remains challenging.

Objectives: We aimed to derive and validate scores based on plasma metabolites for types of meat consumption. For the most predictive score, we aimed to test whether the included metabolites varied with change in meat consumption, and whether the score was associated with incidence of type 2 diabetes (T2D) and other noncommunicable diseases.

Methods: We derived scores based on 781 plasma metabolites for red meat, processed meat, and poultry consumption assessed with 7-d food records among 11,432 participants in the EPIC-Norfolk (European Prospective Investigation into Cancer and Nutrition-Norfolk) cohort. The scores were then tested for internal validity in an independent subset (n = 853) of the same cohort. In focused analysis on the red meat metabolite score, we examined whether the metabolites constituting the score were also associated with meat intake in a randomized crossover dietary intervention trial of meat (n = 12, Lyon, France). In the EPIC-Norfolk study, we assessed the association of the red meat metabolite score with T2D incidence (n = 1478) and other health endpoints.

Results: The best-performing score was for red meat, comprising 139 metabolites which accounted for 17% of the explained variance of red meat consumption in the validation set. In the intervention, 11 top-ranked metabolites in the red meat metabolite score increased significantly after red meat consumption. In the EPIC-Norfolk study, the red meat metabolite score was associated with T2D incidence (adjusted HR per SD: 1.17; 95% CI: 1.10, 1.24).

Conclusions: The red meat metabolite score derived and validated in this study contains metabolites directly derived from meat consumption and is associated with T2D risk. These findings suggest the potential for objective assessment of dietary components and their application for understanding diet-disease associations.The trial in Lyon, France, was registered at clinicaltrials.gov as NCT03354130.

Keywords: biomarker; diabetes; meat; metabolomics; prediction.

© The Author(s) 2022. Published by Oxford University Press on behalf of the American Society for Nutrition.

Figures

FIGURE 1
FIGURE 1
Flowchart for the overall analytic approach for development and validation of the meat metabolomics score. *The visualization simplifies the design of the RCT because only 2 out of 5 arms are shown. EPIC-Norfolk, European Prospective Investigation into Cancer and Nutrition-Norfolk; IARC, International Agency for Research on Cancer; RCT, randomized controlled trial; T2D, type 2 diabetes.
FIGURE 2
FIGURE 2
Coefficients of metabolites with self-reported red and processed meat and poultry intake: the European Prospective Investigation into Cancer and Nutrition-Norfolk study (n = 11,432). Metabolites were classifed by metabolic pathway (16). The colors represent the coefficients (weights) of each metabolite in each metabolite score; red means positive association and blue means negative association. *The metabolite was annotated based on in silico predictions, which indicates the compound has not been confirmed based on a standard but its identity is confident. GPA, glycerol-3-phosphate; GPC, glycerophosphocholine; GPE, glycerophosphoethanolamine; GPI, glycosylphosphatidylinositol; HODE, hydroxyoctadecadienoic acid.
FIGURE 3
FIGURE 3
Volcano plot of candidate metabolites for red meat intake (n = 139) against self-reported red meat intake and comparison of the red meat metabolite score across different categories of meat consumer groups: the European Prospective Investigation into Cancer and Nutrition-Norfolk study (n = 11,432). (A) The top 5 metabolites with the strongest association with self-reported red meat intake after adjustment for age and sex are annotated in the volcano plot. *The metabolite was annotated based on in silico predictions, which indicates the compound has not been confirmed based on a standard but its identity is confident. (B) A red meat nonconsumer was defined as a participant with red meat consumption equal to 0 (n = 1569) and a red meat consumer was a participant with red meat consumption > 0 (n = 9863). Participants who reported consuming a vegetarian diet, other diet, or no special diet were identified from self-reported questionnaires. GPC, glycerophosphocholine; GPE, glycerophosphoethanolamine.
FIGURE 4
FIGURE 4
The associations of the red meat metabolite score and self-reported red meat intake with incident T2D in a nested case-cohort study and exploratory analyses of multiple other health outcomes in the EPIC-Norfolk study. Regression model 1 adjusted for age and sex; regression model 2 adjusted for the following potential confounders: age, sex, education, smoking status, alcohol drinking, alcohol drinking squared, BMI, BMI squared, and dietary factors (consumption of fruits, vegetables, fatty fish and white fish, sugar-sweetened beverages, dairy, legumes, nuts, eggs, and total energy intake). Supplemental Table 1 reports the definition of incident cases and exclusion of prevalent cases. *The association with incident T2D was conducted in a nested case-cohort study in the EPIC-Norfolk study; associations with other exploratory health outcomes were conducted in the EPIC-Norfolk study after exclusion of participants involved in the case-cohort study. EPIC-Norfolk, European Prospective Investigation into Cancer and Nutrition-Norfolk; Mscore, red meat metabolite score; T2D, type 2 diabetes; 7dDD, 7-d diet diary.

References

    1. Hoogendijk EO, Afilalo J, Ensrud KE, Kowal P, Onder G, Fried LP. Frailty: implications for clinical practice and public health. Lancet. 2019;394(10206):1365–75.
    1. Godfray HCJ, Aveyard P, Garnett T, Hall JW, Key TJ, Lorimer Jet al. . Meat consumption, health, and the environment. Science. 2018;361(6399):aam5324.
    1. Yang X, Li Y, Wang C, Mao Z, Zhou W, Zhang Let al. . Meat and fish intake and type 2 diabetes: dose–response meta-analysis of prospective cohort studies. Diabetes Metab. 2020;46(5):345–52.
    1. Neuenschwander M, Ballon A, Weber KS, Norat T, Aune D, Schwingshackl Let al. . Role of diet in type 2 diabetes incidence: umbrella review of meta-analyses of prospective observational studies. BMJ. 2019;366:l2368.
    1. Bouvard V, Loomis D, Guyton KZ, Grosse Y, El Ghissassi F, Benbrahim-Tallaa Let al. . Carcinogenicity of consumption of red and processed meat. Lancet Oncol. 2015;16(16):1599–600.
    1. Nicholson JK, Holmes E, Kinross JM, Darzi AW, Takats Z, Lindon JC. Metabolic phenotyping in clinical and surgical environments. Nature. 2012;491(7424):384–92.
    1. Bar N, Korem T, Weissbrod O, Zeevi D, Rothschild D, Leviatan Set al. . A reference map of potential determinants for the human serum metabolome. Nature. 2020;588(7836):135–40.
    1. Shim J-S, Oh K, Kim HC. Dietary assessment methods in epidemiologic studies. Epidemiol Health. 2014;36:e2014009.
    1. Guasch-Ferré M, Bhupathiraju SN, Hu FB. Use of metabolomics in improving assessment of dietary intake. Clin Chem. 2018;64(1):82–98.
    1. Cheung W, Keski-Rahkonen P, Assi N, Ferrari P, Freisling H, Rinaldi Set al. . A metabolomic study of biomarkers of meat and fish intake. Am J Clin Nutr. 2017;105(3):600–8.
    1. Wedekind R, Kiss A, Keski-Rahkonen P, Viallon V, Rothwell JA, Cross AJet al. . A metabolomic study of red and processed meat intake and acylcarnitine concentrations in human urine and blood. Am J Clin Nutr. 2020;112(2):381–8.
    1. Cuparencu C, Rinnan A, Dragsted LO. Combined markers to assess meat intake—human metabolomic studies of discovery and validation. Mol Nutr Food Res. 2019;63(17):1900106.
    1. Mitry P, Wawro N, Rohrmann S, Giesbertz P, Daniel H, Linseisen J. Plasma concentrations of anserine, carnosine and pi-methylhistidine as biomarkers of habitual meat consumption. Eur J Clin Nutr. 2019;73(5):692–702.
    1. Day N, Oakes S, Luben R, Khaw KT, Bingham S, Welch Aet al. . EPIC-Norfolk: study design and characteristics of the cohort. European Prospective Investigation of Cancer. Br J Cancer. 1999;80(Suppl 1):95–103.
    1. Forouhi NG, Ye Z, Rickard AP, Khaw KT, Luben R, Langenberg Cet al. . Circulating 25-hydroxyvitamin D concentration and the risk of type 2 diabetes: results from the European Prospective Investigation into Cancer (EPIC)-Norfolk cohort and updated meta-analysis of prospective studies. Diabetologia. 2012;55(8):2173–82.
    1. Pietzner M, Stewart ID, Raffler J, Khaw K-T, Michelotti GA, Kastenmüller Get al. . Plasma metabolites to profile pathways in noncommunicable disease multimorbidity. Nat Med. 2021;27(3):471–9.
    1. Wang Y, Gapstur SM, Carter BD, Hartman TJ, Stevens VL, Gaudet MMet al. . Untargeted metabolomics identifies novel potential biomarkers of habitual food intake in a cross-sectional study of postmenopausal women. J Nutr. 2018;148(6):932–43.
    1. Lentjes MAH, McTaggart A, Mulligan AA, Powell NA, Parry-Smith D, Luben RNet al. . Dietary intake measurement using 7 d diet diaries in British men and women in the European Prospective Investigation into Cancer-Norfolk study: a focus on methodological issues. Br J Nutr. 2014;111(3):516–26.
    1. Welch AA, McTaggart A, Mulligan AA, Luben R, Walker N, Khaw KTet al. . DINER (Data Into Nutrients for Epidemiological Research) – a new data-entry program for nutritional analysis in the EPIC–Norfolk cohort and the 7-day diary method. Public Health Nutr. 2001;4(6):1253–65.
    1. Zou H, Hastie T. Regularization and variable selection via the elastic net. J R Statist Soc B. 2005;67(2):301–20.
    1. Abram SV, Helwig NE, Moodie CA, DeYoung CG, MacDonald AWI, Waller NG. Bootstrap enhanced penalized regression for variable selection with neuroimaging data. Front Neurosci. 2016;10:344.
    1. Bunea F, She Y, Ombao H, Gongvatana A, Devlin K, Cohen R. Penalized least squares regression methods and applications to neuroimaging. Neuroimage. 2011;55(4):1519–27.
    1. Hoerl AE, Kennard RW. Ridge regression: biased estimation for nonorthogonal problems. Technometrics. 1970;12(1):55–67.
    1. Wedekind R, Keski-Rahkonen P, Robinot N, Viallon V, Ferrari P, Engel Eet al. . Syringol metabolites as new biomarkers for smoked meat intake. Am J Clin Nutr. 2019;110(6):1424–33.
    1. Sumner LW, Amberg A, Barrett D, Beale MH, Beger R, Daykin CAet al. . Proposed minimum reporting standards for chemical analysis: Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI). Metabolomics. 2007;3(3):211–21.
    1. Onland-Moret NC, van der A DL, van der Schouw YT, Buscher W, Elias SG, van Gils CHet al. . Analysis of case-cohort data: a comparison of different methods. J Clin Epidemiol. 2007;60(4):350–5.
    1. Bingham SA, Welch AA, McTaggart A, Mulligan AA, Runswick SA, Luben Ret al. . Nutritional methods in the European Prospective Investigation of Cancer in Norfolk. Public Health Nutr. 2001;4(3):847–58.
    1. Cuparencu C, Praticó G, Hemeryck LY, Sri Harsha PSC, Noerman S, Rombouts Cet al. . Biomarkers of meat and seafood intake: an extensive literature review. Genes Nutr. 2019;14:35.
    1. Heianza Y, Ma W, Manson JAE, Rexrode KM, Qi L. Gut microbiota metabolites and risk of major adverse cardiovascular disease events and death: a systematic review and meta-analysis of prospective studies. J Am Heart Assoc. 2017;6(7):e004947.
    1. Farhangi MA. Gut microbiota-dependent trimethylamine N-oxide and all-cause mortality: findings from an updated systematic review and meta-analysis. Nutrition. 2020;78:110856.
    1. Zhuang R, Ge X, Han L, Yu P, Gong X, Meng Qet al. . Gut microbe–generated metabolite trimethylamine N-oxide and the risk of diabetes: a systematic review and dose-response meta-analysis. Obes Rev. 2019;20(6):883–94.
    1. Shortt C, Hasselwander O, Meynier A, Nauta A, Fernández EN, Putz Pet al. . Systematic review of the effects of the intestinal microbiota on selected nutrients and non-nutrients. Eur J Nutr. 2018;57(1):25–49.
    1. Khodorova N, Rutledge D, Oberli M, Mathiron D, Marcelo P, Benamouzig Ret al. . Urinary metabolomics profiles associated to bovine meat ingestion in humans. Mol Nutr Food Res. 2019;63(1):1700834.
    1. Braverman NE, Moser AB. Functions of plasmalogen lipids in health and disease. Biochim Biophys Acta. 2012;1822(9):1442–52.
    1. Mazzilli KM, McClain KM, Lipworth L, Playdon MC, Sampson JN, Clish CBet al. . Identification of 102 correlations between serum metabolites and habitual diet in a metabolomics study of the Prostate, Lung, Colorectal, and Ovarian Cancer Trial. J Nutr. 2020;150(4):694–703.
    1. Thürmann PA, Steffen J, Zwernemann C, Aebischer C-P, Cohn W, Wendt Get al. . Plasma concentration response to drinks containing β-carotene as carrot juice or formulated as a water dispersible powder. Eur J Nutr. 2002;41(5):228–35.
    1. Skeaff CM, Hodson L, McKenzie JE. Dietary-induced changes in fatty acid composition of human plasma, platelet, and erythrocyte lipids follow a similar time course. J Nutr. 2006;136(3):565–9.
    1. Welch AA, Bingham SA, Ive J, Friesen MD, Wareham NJ, Riboli Eet al. . Dietary fish intake and plasma phospholipid n–3 polyunsaturated fatty acid concentrations in men and women in the European Prospective Investigation into Cancer–Norfolk United Kingdom cohort. Am J Clin Nutr. 2006;84(6):1330–9.
    1. InterAct Consortium , Bendinelli B, Palli D, Masala G, Sharp SJ, Schulze MBet al.. Association between dietary meat consumption and incident type 2 diabetes: the EPIC-InterAct study. Diabetologia. 2013;56(1):47–59.
    1. Pan A, Sun Q, Bernstein AM, Schulze MB, Manson JE, Willett WCet al. . Red meat consumption and risk of type 2 diabetes: 3 cohorts of US adults and an updated meta-analysis. Am J Clin Nutr. 2011;94(4):1088–96.
    1. Li J, Guasch-Ferré M, Chung W, Ruiz-Canela M, Toledo E, Corella Det al. . The Mediterranean diet, plasma metabolome, and cardiovascular disease risk. Eur Heart J. 2020;41(28):2645–56.

Source: PubMed

3
Subskrybuj