Germline TP53 variants and susceptibility to osteosarcoma

Lisa Mirabello, Meredith Yeager, Phuong L Mai, Julie M Gastier-Foster, Richard Gorlick, Chand Khanna, Ana Patiño-Garcia, Luis Sierrasesúmaga, Fernando Lecanda, Irene L Andrulis, Jay S Wunder, Nalan Gokgoz, Donald A Barkauskas, Xijun Zhang, Aurelie Vogt, Kristine Jones, Joseph F Boland, Stephen J Chanock, Sharon A Savage, Lisa Mirabello, Meredith Yeager, Phuong L Mai, Julie M Gastier-Foster, Richard Gorlick, Chand Khanna, Ana Patiño-Garcia, Luis Sierrasesúmaga, Fernando Lecanda, Irene L Andrulis, Jay S Wunder, Nalan Gokgoz, Donald A Barkauskas, Xijun Zhang, Aurelie Vogt, Kristine Jones, Joseph F Boland, Stephen J Chanock, Sharon A Savage

Abstract

The etiologic contribution of germline genetic variation to sporadic osteosarcoma is not well understood. Osteosarcoma is a sentinel cancer of Li-Fraumeni syndrome (LFS), in which approximately 70% of families meeting the classic criteria have germline TP53 mutations. We sequenced TP53 exons in 765 osteosarcoma cases. Data were analyzed with χ(2) tests, logistic regression, and Cox proportional hazards regression models. We observed a high frequency of young osteosarcoma cases (age <30 years) carrying a known LFS- or likely LFS-associated mutation (3.8%) or rare exonic variant (5.7%) with an overall frequency of 9.5%, compared with none in case patients age 30 years and older (P < .001). This high TP53 mutation prevalence in young osteosarcoma cases is statistically significantly greater than the previously reported prevalence of 3% (P = .0024). We identified a novel association between a TP53 rare variant and metastasis at diagnosis of osteosarcoma (rs1800372, odds ratio = 4.27, 95% confidence interval = 1.2 to 15.5, P = .026). Genetic susceptibility to young onset osteosarcoma is distinct from older adult onset osteosarcoma, with a high frequency of LFS-associated and rare exonic TP53 variants.

Published by Oxford University Press 2015. This work is written by (a) US Government employee(s) and is in the public domain in the US.

References

    1. Mirabello L, Troisi R, Savage S. Osteosarcoma incidence and survival rates from 1973 to 2004: Data from the Surveillance, Epidemiology, and End Results Program. Cancer. 2009;115(7):1531–1543.
    1. Mirabello L, Troisi R, Savage S. International osteosarcoma incidence patterns in children and adolescents, middle ages and elderly persons. Int J Cancer. 2009;125(1):229–234.
    1. Ron E. Cancer risks from medical radiation. Health Phys. 2003;85:47–59.
    1. Mirabello L, Pfeiffer R, Murphy G, et al. Height at diagnosis and birth-weight as risk factors for osteosarcoma. Cancer Causes Control. 2011;22(6):899–908.
    1. Savage SA, Mirabello L, Wang Z, et al. Genome-wide association study identifies two susceptibility loci for osteosarcoma. Nat Genet. 2013;45(7):799–803.
    1. Savage S, Mirabello L. Using epidemiology and genomics to understand osteosarcoma etiology. Sarcoma. 2011;2011:548151.
    1. Musselman J, Bergemann T, Ross J, et al. Case-parent analysis of variation in pubertal hormone genes and pediatric osteosarcoma: a Children’s Oncology Group (COG) study. Int J Mol Epidemiol Genet. 2012;3(4):286–293.
    1. Calvert GT, Randall RL, Jones KB, Cannon-Albright L, Lessnick S, Schiffman JD. At-Risk Populations for Osteosarcoma: The Syndromes and Beyond. Sarcoma. 2012;2012:9.
    1. Li F, Fraumeni JJ. Soft-tissue sarcomas, breast cancer, and other neoplasms. A familial syndrome? Ann Intern Med. 1969;71(4):747–752.
    1. Li F, Fraumeni JJ. Rhabdomyosarcoma in children: epidemiologic study and identification of a familial cancer syndrome. J Natl Cancer Inst. 1969;43(6):1365–1373.
    1. Olivier M, Goldgar D, Sodha N, et al. Li-Fraumeni and related syndromes: correlation between tumor type, family structure, and TP53 genotype. Cancer Res. 2003;63(20):6643–6650.
    1. Malkin D. Li-fraumeni syndrome. Genes Cancer. 2011;2(4):475–484.
    1. Ognjanovic S, Olivier M, Bergemann T, Hainaut P. Sarcomas in TP53 germline mutation carriers: a review of the IARC TP53 database. Cancer. 2012;118(5):1387–1396.
    1. Olivier M, Hollstein M, Hainaut P. TP53 mutations in human cancers: origins, consequences, and clinical use. Cold Spring Harb Perspect Biol. 2010;2(1):a001008.
    1. Li F, Fraumeni J, Jr, Mulvihill J, et al. A cancer family syndrome in twenty-four kindreds. Cancer Res. 1988;48(18):5358–5362.
    1. Tinat J, Bougeard G, Baert-Desurmont S, et al. 2009 Version of the Chompret Criteria for Li Fraumeni Syndrome. J Clin Oncol. 2009;27(26):e108–e109.
    1. Chompret A, Abel A, Stoppa-Lyonnet D, et al. Sensitivity and predictive value of criteria for p53germline mutation screening. J Med Genet. 2001;38(1):43–47.
    1. McIntyre JF, Smith-Sorensen B, Friend SH, et al. Germline mutations of the p53 tumor suppressor gene in children with osteosarcoma. J Clin Oncol. 1994;12(5):925–930.
    1. Toguchida J, Yamaguchi T, Dayton SH, et al. Prevalence and Spectrum of Germline Mutations of the p53 Gene among Patients with Sarcoma. New Engl J Med. 1992;326(20):1301–1308.
    1. Savage SA, Burdett L, Troisi R, Douglass C, Hoover RN, Chanock SJ. Germ-line genetic variation of TP53 in osteosarcoma. Pediatr Blood Cancer. 2007;49:28–33.
    1. Toffoli G, Biason P, Russo A, et al. Effect of TP53 Arg72Pro and MDM2 SNP309 Polymorphisms on the Risk of High-Grade Osteosarcoma Development and Survival. Clin Cancer Res. 2009;15(10):3550–3556.
    1. Gokgoz N, Wunder J, Mousses S, Eskandarian S, Bell R, Andrulis I. Comparison of p53 mutations in patients with localized osteosarcoma and metastatic osteosarcoma. Cancer. 2001;92(8):2181–2189.
    1. Pakos E, Kyzas P, Ioannidis J. Prognostic significance of TP53 tumor suppressor gene expression and mutations in human osteosarcoma: a meta-analysis. Clin Cancer Res. 2004;10(18 Pt 1):6208–6214.
    1. Petitjean A, Mathe E, Kato S, et al. Impact of mutant p53 functional properties on TP53 mutation patterns and tumor phenotype: lessons from recent developments in the IARC TP53 database. Hum Mutat. 2007;28:622–629.
    1. Kato S, Han S-Y, Liu W, et al. Understanding the function–structure and function–mutation relationships of p53 tumor suppressor protein by high-resolution missense mutation analysis. Proc Natl Acad Sci U S A. 2003;100(14):8424–8429.
    1. Li X, Dumont P, Pietra AD, Shetler C, Murphy ME. The Codon 47 Polymorphism in p53 Is Functionally Significant. J Biol Chem. 2005;280(25):24245–24251.
    1. Adzhubei IA, Schmidt S, Peshkin L, et al. A method and server for predicting damaging missense mutations. Nat Meth. 2010;7(4):248–249.
    1. Schwarz JM, Rodelsperger C, Schuelke M, Seelow D. MutationTaster evaluates disease-causing potential of sequence alterations. Nat Meth. 2010;7(8):575–576.
    1. Kumar P, Henikoff S, Ng PC. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protocols. 2009;4(8):1073–1081.
    1. A map of human genome variation from population-scale sequencing. Nature. 2010;467(7319):1061–1073.
    1. Grambsch P, Therneau T. Proportional hazards tests and diagnostics based on weighted residuals. Biometrika. 1994;81:515–526.
    1. Diller L, Sexsmith E, Gottlieb A, Li FP, Malkin D. Germline p53 mutations are frequently detected in young children with rhabdomyosarcoma. J Clin Invest. 1995;95(4):1606–1611.
    1. Hwang S-J, Lozano G, Amos CI, Strong LC. Germline p53 Mutations in a Cohort with Childhood Sarcoma: Sex Differences in Cancer Risk. Am J Hum Genet. 2003;72(4):975–983.
    1. Ognjanovic S, Olivier M, Bergemann TL, Hainaut P. Sarcomas in TP53 germline mutation carriers. Cancer. 2012;118(5):1387–1396.
    1. Carraro DM, Koike Folgueira MAA, Garcia Lisboa BC, et al. Comprehensive Analysis of BRCA1, BRCA2 and TP53 Germline Mutation and Tumor Characterization: A Portrait of Early-Onset Breast Cancer in Brazil. PLoS ONE. 2013;8(3):e57581.
    1. Lee D, Yoon S-Y, Looi L, et al. Comparable frequency of BRCA1, BRCA2 and TP53 germline mutations in a multi-ethnic Asian cohort suggests TP53 screening should be offered together with BRCA1/2 screening to early-onset breast cancer patients. Breast Cancer Res. 2012;14(2):R66.
    1. Mouchawar J, Korch C, Byers T, et al. Population-Based Estimate of the Contribution of TP53 Mutations to Subgroups of Early-Onset Breast Cancer: Australian Breast Cancer Family Study. Cancer Res. 2010;70(12):4795–4800.
    1. Villani A, Tabori U, Schiffman J, et al. Biochemical and imaging surveillance in germline TP53 mutation carriers with Li-Fraumeni syndrome: a prospective observational study. Lancet Oncol. 2011;12(6):559–567.

Source: PubMed

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