Severe dengue epidemics in Sri Lanka, 2003-2006

Nalaka Kanakaratne, Wahala M P B Wahala, William B Messer, Hasitha A Tissera, Aruna Shahani, Nihal Abeysinghe, Aravinda M de-Silva, Maya Gunasekera, Nalaka Kanakaratne, Wahala M P B Wahala, William B Messer, Hasitha A Tissera, Aruna Shahani, Nihal Abeysinghe, Aravinda M de-Silva, Maya Gunasekera

Abstract

Recent emergence of dengue hemorrhagic fever in the Indian subcontinent has been well documented in Sri Lanka. We compare recent (2003-2006) and past (1980-1997) dengue surveillance data for Sri Lanka. The 4 dengue virus (DENV) serotypes have been cocirculating in Sri Lanka for >30 years. Over this period, a new genotype of DENV-1 has replaced an old genotype. Moreover, new clades of DENV-3 genotype III viruses have replaced older clades. Emergence of new clades of DENV-3 in 1989 and 2000 coincided with abrupt increases in the number of reported dengue cases, implicating this serotype in severe epidemics. In 1980-1997, most reported dengue cases were in children. Recent epidemics have been characterized by many cases in children and adults. Changes in local transmission dynamics and genetic changes in DENV-3 are likely increasing emergence of severe dengue epidemics in Sri Lanka.

Figures

Figure 1
Figure 1
A) Dengue cases reported to the Epidemiology Unit, Ministry of Health, Sri Lanka (1981–2005). B) Comparison of monthly reported data for Colombo and Genetech for 2003–2006. Colombo data are based on cases reported to the Ministry of Health by hospitals and clinics within the Colombo Municipal Council. Genetech data are based on the number of PCR-positive cases detected each month.
Figure 2
Figure 2
Relative abundance of dengue (DEN) virus serotypes in Sri Lanka. DEN-positive serum samples obtained from October 2003 through September 2006 were serotyped by reverse transcription–PCR.
Figure 3
Figure 3
Clinically apparent dengue in different age groups in Sri Lanka, 2003–2006, Sri Lanka. Because true incidence data were not available, relative incidence of dengue infections by age cohort was estimated. We used Genetech data and known population of Colombo by age, to estimate relative incidence. The age group (>60 years) with the lowest transmission rate was used as a referent for calculating the fold difference between each remaining cohort and the referent.
Figure 4
Figure 4
Phylogram of dengue serotype 1 viruses (DENV-1) from Sri Lanka (SL), 1983–2004, and other DENV-1 viruses. The tree is based on a 498-bp fragment for positions 2056–2554 coding portions of envelope protein and nonstructural protein 1. Evolutionary history was inferred by using minimum evolution method (12). Percentages of replicate trees in which the associated taxa clustered in the bootstrap test (1,000 replicates) are shown next to the branches (13). Phylogenetic analyses were conducted in MEGA4 (14). The tree was rooted by using a DENV-1 sylvatic strain. Classification and naming of different DENV-1 genotypes is based on the report by Rico-Hesse (5). Scale bar represents number of base substitutions per site.
Figure 5
Figure 5
Phylogram of dengue serotype 2 viruses (DENV-2) from Sri Lanka (SL), 1981–2004, and other DENV-2 viruses. The tree is based on a 239-bp fragment for positions 2311–2550 coding for amino acids at the envelope protein/nonstructural protein 1 junction. The tree was constructed as described in Figure 4 and was rooted by using a DENV-2 sylvatic strain. Classification and naming of different DENV-2 genotypes is based on the report by Rico-Hesse (5). Scale bar represents number of base substitutions per site.
Figure 6
Figure 6
Phylogram of dengue serotype 3 (DENV-3) genotype III viruses from Sri Lanka (SL), 1981–2004, and other DENV-3 genotype III viruses. The tree is based on a 966-bp fragment for positions 179–1144 coding for a portion of the capsid protein, all of the premembrane protein, and a portion of the envelope protein. The tree was constructed as described in Figure 4 and rooted by using a DENV-3 genotype I virus (H87). Naming of the different groups within DENV-3 genotype III is based on the report by Messer et al. (7). Scale bar represents number of base substitutions per site
Figure 7
Figure 7
Phylogram of dengue serotype 4 viruses (DENV-4) from Sri Lanka (SL), 1978–2004, and other DENV-4 viruses. The tree is based on a 296-bp for positions 787–1083 coding for portions of premembrane and envelope proteins. The tree was constructed as described in Figure 4 and rooted by using a sylvatic DENV-4 strain. Classification and naming of different DENV-4 genotypes is based on the report by Rico-Hesse (5). Scale bar represents number of base substitutions per site.

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