An Isolated Complex V Inefficiency and Dysregulated Mitochondrial Function in Immortalized Lymphocytes from ME/CFS Patients
Daniel Missailidis, Sarah J Annesley, Claire Y Allan, Oana Sanislav, Brett A Lidbury, Donald P Lewis, Paul R Fisher, Daniel Missailidis, Sarah J Annesley, Claire Y Allan, Oana Sanislav, Brett A Lidbury, Donald P Lewis, Paul R Fisher
Abstract
Myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) is an enigmatic condition characterized by exacerbation of symptoms after exertion (post-exertional malaise or "PEM"), and by fatigue whose severity and associated requirement for rest are excessive and disproportionate to the fatigue-inducing activity. There is no definitive molecular marker or known underlying pathological mechanism for the condition. Increasing evidence for aberrant energy metabolism suggests a role for mitochondrial dysfunction in ME/CFS. Our objective was therefore to measure mitochondrial function and cellular stress sensing in actively metabolizing patient blood cells. We immortalized lymphoblasts isolated from 51 ME/CFS patients diagnosed according to the Canadian Consensus Criteria and an age- and gender-matched control group. Parameters of mitochondrial function and energy stress sensing were assessed by Seahorse extracellular flux analysis, proteomics, and an array of additional biochemical assays. As a proportion of the basal oxygen consumption rate (OCR), the rate of ATP synthesis by Complex V was significantly reduced in ME/CFS lymphoblasts, while significant elevations were observed in Complex I OCR, maximum OCR, spare respiratory capacity, nonmitochondrial OCR and "proton leak" as a proportion of the basal OCR. This was accompanied by a reduction of mitochondrial membrane potential, chronically hyperactivated TOR Complex I stress signaling and upregulated expression of mitochondrial respiratory complexes, fatty acid transporters, and enzymes of the β-oxidation and TCA cycles. By contrast, mitochondrial mass and genome copy number, as well as glycolytic rates and steady state ATP levels were unchanged. Our results suggest a model in which ME/CFS lymphoblasts have a Complex V defect accompanied by compensatory upregulation of their respiratory capacity that includes the mitochondrial respiratory complexes, membrane transporters and enzymes involved in fatty acid β-oxidation. This homeostatically returns ATP synthesis and steady state levels to "normal" in the resting cells, but may leave them unable to adequately respond to acute increases in energy demand as the relevant homeostatic pathways are already activated.
Keywords: Complex V; TORC1; chronic fatigue syndrome; mitochondria; myalgic encephalomyelitis; seahorse respirometry.
Conflict of interest statement
The authors declare no conflict of interest.
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References
- Carruthers B.M., van de Sande M.I., De Meirleir K.L., Klimas N.G., Broderick G., Mitchell T., Staines D., Powles A.C., Speight N., Vallings R., et al. Myalgic encephalomyelitis: International Consensus Criteria. J. Intern. Med. 2011;270:327–338. doi: 10.1111/j.1365-2796.2011.02428.x.
- Afari N., Buchwald D. Chronic fatigue syndrome: A review. Am. J. Psychiatry. 2003;160:221–236. doi: 10.1176/appi.ajp.160.2.221.
- Morris G., Maes M. Mitochondrial dysfunctions in myalgic encephalomyelitis/chronic fatigue syndrome explained by activated immuno-inflammatory, oxidative and nitrosative stress pathways. Metab. Brain Dis. 2014;29:19–36. doi: 10.1007/s11011-013-9435-x.
- Smits B., van den Heuvel L., Knoop H., Kusters B., Janssen A., Borm G., Bleijenberg G., Rodenburg R., van Engelen B. Mitochondrial enzymes discriminate between mitochondrial disorders and chronic fatigue syndrome. Mitochondrion. 2011;11:735–738. doi: 10.1016/j.mito.2011.05.005.
- O’Neill H.M., Maarbjerg S.J., Crane J.D., Jeppesen J., Jorgensen S.B., Schertzer J.D., Shyroka O., Kiens B., van Denderen B.J., Tarnopolsky M.A., et al. AMP-activated protein kinase (AMPK) beta1beta2 muscle null mice reveal an essential role for AMPK in maintaining mitochondrial content and glucose uptake during exercise. Proc. Natl. Acad. Sci. USA. 2011;108:16092–16097. doi: 10.1073/pnas.1105062108.
- Myhill S., Booth N.E., McLaren-Howard J. Chronic fatigue syndrome and mitochondrial dysfunction. Int. J. Clin. Exp. Med. 2009;2:1–16.
- Booth N.E., Myhill S., McLaren-Howard J. Mitochondrial dysfunction and the pathophysiology of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) Int. J. Clin. Exp. Med. 2012;5:208–220.
- Tomas C., Brown A., Strassheim V., Elson J.L., Newton J., Manning P. Cellular bioenergetics is impaired in patients with chronic fatigue syndrome. PLoS ONE. 2017;12:e0186802. doi: 10.1371/journal.pone.0186802.
- Tomas C., Lodge T.A., Potter M., Elson J.L., Newton J.L., Morten K.J. Assessing cellular energy dysfunction in CFS/ME using a commercially available laboratory test. Sci. Rep. 2019;9:11464. doi: 10.1038/s41598-019-47966-z.
- Vermeulen R.C., Kurk R.M., Visser F.C., Sluiter W., Scholte H.R. Patients with chronic fatigue syndrome performed worse than controls in a controlled repeated exercise study despite a normal oxidative phosphorylation capacity. J. Transl. Med. 2010;8:93. doi: 10.1186/1479-5876-8-93.
- Lawson N., Hsieh C.H., March D., Wang X. Elevated Energy Production in Chronic Fatigue Syndrome Patients. J. Nat. Sci. 2016;2
- Kaushik N., Fear D., Richards S.C., McDermott C.R., Nuwaysir E.F., Kellam P., Harrison T.J., Wilkinson R.J., Tyrrell D.A., Holgate S.T., et al. Gene expression in peripheral blood mononuclear cells from patients with chronic fatigue syndrome. J. Clin. Pathol. 2005;58:826–832. doi: 10.1136/jcp.2005.025718.
- Ciregia F., Kollipara L., Giusti L., Zahedi R.P., Giacomelli C., Mazzoni M.R., Giannaccini G., Scarpellini P., Urbani A., Sickmann A., et al. Bottom-up proteomics suggests an association between differential expression of mitochondrial proteins and chronic fatigue syndrome. Transl. Psychiatry. 2016;6:e904. doi: 10.1038/tp.2016.184.
- Nelson C., Ambros V., Baehrecke E.H. miR-14 regulates autophagy during developmental cell death by targeting ip3-kinase 2. Mol. Cell. 2014;56:376–388. doi: 10.1016/j.molcel.2014.09.011.
- Mandarano A.H., Maya J., Giloteaux L., Peterson D.L., Maynard M., Gottschalk C.G., Hanson M.R. Myalgic encephalomyelitis/chronic fatigue syndrome patients exhibit altered T cell metabolism and cytokine associations. J. Clin. Invest. 2019 doi: 10.1172/JCI132185.
- Armstrong C.W., McGregor N.R., Lewis D., Butt H., Gooley P.R. Metabolic profiling reveals anomalous energy metabolism and oxidative stress pathways in chronic fatigue syndrome patients. Metabolomics. 2015;11:1626–1639. doi: 10.1007/s11306-015-0816-5.
- Fluge O., Mella O., Bruland O., Risa K., Dyrstad S.E., Alme K., Rekeland I.G., Sapkota D., Rosland G.V., Fossa A., et al. Metabolic profiling indicates impaired pyruvate dehydrogenase function in myalgic encephalopathy/chronic fatigue syndrome. JCI Insight. 2016;1:e89376. doi: 10.1172/jci.insight.89376.
- Loewith R., Hall M.N. Target of rapamycin (TOR) in nutrient signaling and growth control. Genetics. 2011;189:1177–1201. doi: 10.1534/genetics.111.133363.
- Cunningham J.T., Rodgers J.T., Arlow D.H., Vazquez F., Mootha V.K., Puigserver P. mTOR controls mitochondrial oxidative function through a YY1-PGC-1alpha transcriptional complex. Nature. 2007;450:736–740. doi: 10.1038/nature06322.
- Morita M., Gravel S.P., Hulea L., Larsson O., Pollak M., St-Pierre J., Topisirovic I. mTOR coordinates protein synthesis, mitochondrial activity and proliferation. Cell Cycle. 2015;14:473–480. doi: 10.4161/15384101.2014.991572.
- Annesley S.J., Lay S.T., De Piazza S.W., Sanislav O., Hammersley E., Allan C.Y., Francione L.M., Bui M.Q., Chen Z.P., Ngoei K.R., et al. Immortalized Parkinson’s disease lymphocytes have enhanced mitochondrial respiratory activity. Dis. Model. Mech. 2016;9:1295–1305. doi: 10.1242/dmm.025684.
- Loesch D.Z., Annesley S.J., Trost N., Bui M.Q., Lay S.T., Storey E., De Piazza S.W., Sanislav O., Francione L.M., Hammersley E.M., et al. Novel Blood Biomarkers Are Associated with White Matter Lesions in Fragile X- Associated Tremor/Ataxia Syndrome. Neurodegener. Dis. 2017;17:22–30. doi: 10.1159/000446803.
- Vernon S.D., Whistler T., Cameron B., Hickie I.B., Reeves W.C., Lloyd A. Preliminary evidence of mitochondrial dysfunction associated with post-infective fatigue after acute infection with Epstein Barr virus. BMC Infect Dis. 2006;6:15. doi: 10.1186/1471-2334-6-15.
- Richardson A.M., Lewis D.P., Kita B., Ludlow H., Groome N.P., Hedger M.P., de Kretser D.M., Lidbury B.A. Weighting of orthostatic intolerance time measurements with standing difficulty score stratifies ME/CFS symptom severity and analyte detection. J. Transl. Med. 2018;16:97. doi: 10.1186/s12967-018-1473-z.
- Bereiter-Hahn J., Voth M. Dynamics of mitochondria in living cells: Shape changes, dislocations, fusion, and fission of mitochondria. Microsc. Res. Tech. 1994;27:198–219. doi: 10.1002/jemt.1070270303.
- Nguyen T., Staines D., Johnston S., Marshall-Gradisnik S. Reduced glycolytic reserve in isolated natural killer cells from Myalgic encephalomyelitis/chronic fatigue syndrome patients: A preliminary investigation. Asian Pac. J. Allergy Immunol. 2018 doi: 10.12932/AP-011117-0188.
- Nagy-Szakal D., Barupal D.K., Lee B., Che X., Williams B.L., Kahn E.J.R., Ukaigwe J.E., Bateman L., Klimas N.G., Komaroff A.L., et al. Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics. Sci. Rep. 2018;8:10056. doi: 10.1038/s41598-018-28477-9.
- Germain A., Ruppert D., Levine S.M., Hanson M.R. Metabolic profiling of a myalgic encephalomyelitis/chronic fatigue syndrome discovery cohort reveals disturbances in fatty acid and lipid metabolism. Mol. Biosyst. 2017;13:371–379. doi: 10.1039/C6MB00600K.
- Naviaux R.K., Naviaux J.C., Li K., Bright A.T., Alaynick W.A., Wang L., Baxter A., Nathan N., Anderson W., Gordon E. Metabolic features of chronic fatigue syndrome. Proc. Natl. Acad. Sci. USA. 2016;113:E5472–E5480. doi: 10.1073/pnas.1607571113.
- Carling D., Mayer F.V., Sanders M.J., Gamblin S.J. AMP-activated protein kinase: Nature’s energy sensor. Nat. Chem. Biol. 2011;7:512–518. doi: 10.1038/nchembio.610.
- Dalle Pezze P., Ruf S., Sonntag A.G., Langelaar-Makkinje M., Hall P., Heberle A.M., Razquin Navas P., van Eunen K., Tolle R.C., Schwarz J.J., et al. A systems study reveals concurrent activation of AMPK and mTOR by amino acids. Nat. Commun. 2016;7:13254. doi: 10.1038/ncomms13254.
- Hardie D.G. Adenosine monophosphate-activated protein kinase: A central regulator of metabolism with roles in diabetes, cancer, and viral infection. Cold Spring Harb. Symp. Quant. Biol. 2011;76:155–164. doi: 10.1101/sqb.2011.76.010819.
- Hindupur S.K., Gonzalez A., Hall M.N. The opposing actions of target of rapamycin and AMP-activated protein kinase in cell growth control. Cold Spring Harb. Perspect. Biol. 2015;7:a019141. doi: 10.1101/cshperspect.a019141.
- Reznick R.M., Shulman G.I. The role of AMP-activated protein kinase in mitochondrial biogenesis. J. Physiol. 2006;574:33–39. doi: 10.1113/jphysiol.2006.109512.
- Zong H., Ren J.M., Young L.H., Pypaert M., Mu J., Birnbaum M.J., Shulman G.I. AMP kinase is required for mitochondrial biogenesis in skeletal muscle in response to chronic energy deprivation. Proc. Natl. Acad. Sci. USA. 2002;99:15983–15987. doi: 10.1073/pnas.252625599.
- Ma X.M., Blenis J. Molecular mechanisms of mTOR-mediated translational control. Nat Rev. Mol. Cell Biol. 2009;10:307–318. doi: 10.1038/nrm2672.
- Dowling R.J., Topisirovic I., Alain T., Bidinosti M., Fonseca B.D., Petroulakis E., Wang X., Larsson O., Selvaraj A., Liu Y., et al. mTORC1-mediated cell proliferation, but not cell growth, controlled by the 4E-BPs. Science. 2010;328:1172–1176. doi: 10.1126/science.1187532.
- Hsieh A.C., Costa M., Zollo O., Davis C., Feldman M.E., Testa J.R., Meyuhas O., Shokat K.M., Ruggero D. Genetic dissection of the oncogenic mTOR pathway reveals druggable addiction to translational control via 4EBP-eIF4E. Cancer Cell. 2010;17:249–261. doi: 10.1016/j.ccr.2010.01.021.
- She Q.B., Halilovic E., Ye Q., Zhen W., Shirasawa S., Sasazuki T., Solit D.B., Rosen N. 4E-BP1 is a key effector of the oncogenic activation of the AKT and ERK signaling pathways that integrates their function in tumors. Cancer Cell. 2010;18:39–51. doi: 10.1016/j.ccr.2010.05.023.
- Qin X., Jiang B., Zhang Y. 4E-BP1, a multifactor regulated multifunctional protein. Cell Cycle. 2016;15:781–786. doi: 10.1080/15384101.2016.1151581.
- Tomas C., Brown A.E., Newton J.L., Elson J.L. Mitochondrial complex activity in permeabilised cells of chronic fatigue syndrome patients using two cell types. PeerJ. 2019;7:e6500. doi: 10.7717/peerj.6500.
- Wolvetang E.J., Johnson K.L., Krauer K., Ralph S.J., Linnane A.W. Mitochondrial respiratory chain inhibitors induce apoptosis. FEBS Lett. 1994;339:40–44. doi: 10.1016/0014-5793(94)80380-3.
- Ransohoff R.M., Schafer D., Vincent A., Blachere N.E., Bar-Or A. Neuroinflammation: Ways in Which the Immune System Affects the Brain. Neurotherapeutics. 2015;12:896–909. doi: 10.1007/s13311-015-0385-3.
- Hussain T., Mulherkar R. Lymphoblastoid Cell lines: A Continuous in Vitro Source of Cells to Study Carcinogen Sensitivity and DNA Repair. Int. J. Mol. Cell Med. 2012;1:75–87.
- Sie L., Loong S., Tan E.K. Utility of lymphoblastoid cell lines. J. Neurosci. Res. 2009;87:1953–1959. doi: 10.1002/jnr.22000.
- Genomes Project C., Auton A., Brooks L.D., Durbin R.M., Garrison E.P., Kang H.M., Korbel J.O., Marchini J.L., McCarthy S., McVean G.A., et al. A global reference for human genetic variation. Nature. 2015;526:68–74. doi: 10.1038/nature15393.
- Cortes Rivera M., Mastronardi C., Silva-Aldana C.T., Arcos-Burgos M., Lidbury B.A. Myalgic Encephalomyelitis/Chronic Fatigue Syndrome: A Comprehensive Review. Diagnostics (Basel) 2019;9:91. doi: 10.3390/diagnostics9030091.
- Hernando H., Shannon-Lowe C., Islam A.B., Al-Shahrour F., Rodriguez-Ubreva J., Rodriguez-Cortez V.C., Javierre B.M., Mangas C., Fernandez A.F., Parra M., et al. The B cell transcription program mediates hypomethylation and overexpression of key genes in Epstein-Barr virus-associated proliferative conversion. Genome Biol. 2013;14:R3. doi: 10.1186/gb-2013-14-1-r3.
- Bigot A., Jacquemin V., Debacq-Chainiaux F., Butler-Browne G.S., Toussaint O., Furling D., Mouly V. Replicative aging down-regulates the myogenic regulatory factors in human myoblasts. Biol. Cell. 2008;100:189–199. doi: 10.1042/BC20070085.
- Huttenlocher A., Lakonishok M., Kinder M., Wu S., Truong T., Knudsen K.A., Horwitz A.F. Integrin and cadherin synergy regulates contact inhibition of migration and motile activity. J. Cell Biol. 1998;141:515–526. doi: 10.1083/jcb.141.2.515.
- Schlauch K.A., Khaiboullina S.F., De Meirleir K.L., Rawat S., Petereit J., Rizvanov A.A., Blatt N., Mijatovic T., Kulick D., Palotas A., et al. Genome-wide association analysis identifies genetic variations in subjects with myalgic encephalomyelitis/chronic fatigue syndrome. Transl. Psychiatry. 2016;6:e730. doi: 10.1038/tp.2015.208.
- Billing-Ross P., Germain A., Ye K., Keinan A., Gu Z., Hanson M.R. Mitochondrial DNA variants correlate with symptoms in myalgic encephalomyelitis/chronic fatigue syndrome. J. Transl. Med. 2016;14:19. doi: 10.1186/s12967-016-0771-6.
- Campanella M., Seraphim A., Abeti R., Casswell E., Echave P., Duchen M.R. IF1, the endogenous regulator of the F(1)F(o)-ATPsynthase, defines mitochondrial volume fraction in HeLa cells by regulating autophagy. Biochim. Biophys. Acta. 2009;1787:393–401. doi: 10.1016/j.bbabio.2009.02.023.
- Garcia-Bermudez J., Cuezva J.M. The ATPase Inhibitory Factor 1 (IF1): A master regulator of energy metabolism and of cell survival. Biochim. Biophys. Acta. 2016;1857:1167–1182. doi: 10.1016/j.bbabio.2016.02.004.
- Gilardini Montani M.S., Santarelli R., Granato M., Gonnella R., Torrisi M.R., Faggioni A., Cirone M. EBV reduces autophagy, intracellular ROS and mitochondria to impair monocyte survival and differentiation. Autophagy. 2019;15:652–667. doi: 10.1080/15548627.2018.1536530.
- Anand S.K., Tikoo S.K. Viruses as modulators of mitochondrial functions. Adv. Virol. 2013;2013:738794. doi: 10.1155/2013/738794.
- Woods A., Dickerson K., Heath R., Hong S.P., Momcilovic M., Johnstone S.R., Carlson M., Carling D. Ca2+/calmodulin-dependent protein kinase kinase-beta acts upstream of AMP-activated protein kinase in mammalian cells. Cell Metab. 2005;2:21–33. doi: 10.1016/j.cmet.2005.06.005.
- Hawley S.A., Pan D.A., Mustard K.J., Ross L., Bain J., Edelman A.M., Frenguelli B.G., Hardie D.G. Calmodulin-dependent protein kinase kinase-beta is an alternative upstream kinase for AMP-activated protein kinase. Cell Metab. 2005;2:9–19. doi: 10.1016/j.cmet.2005.05.009.
- Hardie D.G., Carling D. The AMP-activated protein kinase--fuel gauge of the mammalian cell? Eur. J. Biochem. 1997;246:259–273. doi: 10.1111/j.1432-1033.1997.00259.x.
- Bokko P.B., Francione L., Bandala-Sanchez E., Ahmed A.U., Annesley S.J., Huang X., Khurana T., Kimmel A.R., Fisher P.R. Diverse cytopathologies in mitochondrial disease are caused by AMP-activated protein kinase signaling. Mol. Biol. Cell. 2007;18:1874–1886. doi: 10.1091/mbc.e06-09-0881.
- Hardie D.G., Pan D.A. Regulation of fatty acid synthesis and oxidation by the AMP-activated protein kinase. Biochem. Soc. Trans. 2002;30:1064–1070. doi: 10.1042/bst0301064.
- Brown A.E., Jones D.E., Walker M., Newton J.L. Abnormalities of AMPK activation and glucose uptake in cultured skeletal muscle cells from individuals with chronic fatigue syndrome. PLoS ONE. 2015;10:e0122982. doi: 10.1371/journal.pone.0122982.
- Carruthers B.M., Jain A.K., De Meirleir K.L., Peterson D.L., Klimas N.G., Lerner A.M., Bested A.C., Flor-Henry P., Joshi P., Powles A.C., et al. Myalgic Encephalomyelitis/Chronic Fatigue Syndrome: Clinical Working Case Definition, Diagnostic and Treatment Protocols. J. Chronic Fatigue Syndr. 2003;11:7–36. doi: 10.1300/J092v11n01_02.
- Pendergrass W., Wolf N., Poot M. Efficacy of MitoTracker Green and CMXrosamine to measure changes in mitochondrial membrane potentials in living cells and tissues. Cytometry A. 2004;61:162–169. doi: 10.1002/cyto.a.20033.
- Lay M.L., Lucas R.M., Ratnamohan M., Taylor J., Ponsonby A.L., Dwyer D.E., Ausimmune Investigator G. Measurement of Epstein-Barr virus DNA load using a novel quantification standard containing two EBV DNA targets and SYBR Green I dye. Virol. J. 2010;7:252. doi: 10.1186/1743-422X-7-252.
- Fox J. The R commander: A basic-statistics graphical user interface to R. J. Stat. Softw. 2005;14:1–42. doi: 10.18637/jss.v014.i09.
- Kanda Y. Investigation of the freely available easy-to-use software ‘EZR’ for medical statistics. Bone Marrow Transplant. 2013;48:452–458. doi: 10.1038/bmt.2012.244.
- Harris M.A., Clark J., Ireland A., Lomax J., Ashburner M., Foulger R., Eilbeck K., Lewis S., Marshall B., Mungall C., et al. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 2004;32:D258–D261. doi: 10.1093/nar/gkh036.
- Brown A.E., Dibnah B., Fisher E., Newton J.L., Walker M. Pharmacological activation of AMPK and glucose uptake in cultured human skeletal muscle cells from patients with ME/CFS. Biosci. Rep. 2018;38 doi: 10.1042/BSR20180242.
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