Follow-up of the Nasal Microbiome and Viral Infections in Newborns Hospitalised in Neonatology. (NEOBIOME)
Follow-up of the Nasal Microbiome and Viral Infections in Newborns Hospitalised in Neonatology in the University Hospital of Caen, France : Metatranscriptomics Approach by Next Generation Sequencing From Nasal Swabs.
The goal of this interventional study is to learn about nasal microbiome and viral infections in newborns hospitalised in neonatology.
The main questions it aims to answer are :
- how often are newborns infected by viruses in neonatology ?
- how does the microbiome develop during first weeks of life ?
- how does microbiome and viruses interacts together ?
- is there a link between viral infection, microbiome, and medical complications during hospitalisation in neonatology ? Participants will have a nasal swab taken each week during their hospitalisation in neonatology, and researchers will take medical data from the medical chart.
Study Overview
Status
Status
Conditions
Conditions
Intervention / Treatment
Intervention / Treatment
Study Type
Study Type
Enrollment (Actual)
Enrollment
Phase
Phase
- Not Applicable
Contacts and Locations
Study Contact
Study Contact
- Name: Amélie Blanchetière
- Phone Number: +33231272564
- Email: blanchetiere-a@chu-caen.fr
Study Contact Backup
- Name: Meriadeg Le Gouil
- Phone Number: +33231272554
- Email: meriadeg.legouil@unicaen.fr
Study Locations
-
-
-
Caen, France
- Caen University hospital
-
-
Participation Criteria
Eligibility Criteria
Eligibility Criteria
Ages Eligible for Study
Accepts Healthy Volunteers
Description
Inclusion Criteria:
- newborn hospitalised in neonatal intensive care unit during the inclusion period
- parents have been informed about the study (speaking french) and have signed the informed consent.
- affiliated to the social security system.
Exclusion Criteria:
- parental refusal
- minor parents or under judicial protection
- newborn who already have been discharded home before inclusion
- hospitalisation after the first 48 hours of life
- only palliative care
Study Plan
How is the study designed?
Design Details
- Primary Purpose: Basic Science
- Allocation: N/A
- Interventional Model: Single Group Assignment
- Masking: None (Open Label)
What is the study measuring?
Primary Outcome Measures
Primary Outcome Measures
Outcome Measure |
Measure Description |
Time Frame |
|---|---|---|
|
Change in microbiome diversity
Time Frame: Day 0, day 7, day 14, and each week until discharge (maximum duration : 3 months for each newborn).
|
Shannon diversity index
|
Day 0, day 7, day 14, and each week until discharge (maximum duration : 3 months for each newborn).
|
|
Change in microbiome abundance
Time Frame: Day 0, day 7, day 14, and each week until discharge (maximum duration : 3 months for each newborn).
|
Number of reads for a given taxonomy.
|
Day 0, day 7, day 14, and each week until discharge (maximum duration : 3 months for each newborn).
|
|
Virus presence
Time Frame: Day 0, day 7, day 14, and each week until discharge (maximum duration : 3 months for each newborn).
|
Molecular detection of respiratory viruses using multiplex PCR.
|
Day 0, day 7, day 14, and each week until discharge (maximum duration : 3 months for each newborn).
|
Secondary Outcome Measures
Secondary Outcome Measures
Outcome Measure |
Measure Description |
Time Frame |
|---|---|---|
|
Occurence of bronchopulmonary dysplasia
Time Frame: At discharge from neonatology.
|
assessed by clinical recording on discharge from neonatology
|
At discharge from neonatology.
|
|
Change in expression of local innate immunity markers
Time Frame: Day 0, day 7, day 14, and each week until discharge (maximum duration : 3 months for each newborn).
|
Mesure of the expression of the interferon-stimulated genes (ISGs), anti-viral genes, and the inflammasome pathway.
|
Day 0, day 7, day 14, and each week until discharge (maximum duration : 3 months for each newborn).
|
Collaborators and Investigators
Sponsor
Sponsor
Study record dates
Study Major Dates
Study Start (Actual)
Study Start
Primary Completion (Actual)
Primary Completion
Study Completion (Actual)
Study Completion
Study Registration Dates
First Submitted
First Submitted
First Submitted That Met QC Criteria
First Submitted That Met QC Criteria
First Posted (Actual)
First Posted
Study Record Updates
Last Update Posted (Estimated)
Last Update Posted
Last Update Submitted That Met QC Criteria
Last Update Submitted That Met QC Criteria
Last Verified
Last Verified
More Information
Terms related to this study
Keywords
Additional Relevant MeSH Terms
Other Study ID Numbers
Other Study ID Numbers
- 2022-A01965-38
Plan for Individual participant data (IPD)
Plan to Share Individual Participant Data (IPD)?
IPD Plan Description
Drug and device information, study documents
Studies a U.S. FDA-regulated drug product
Studies a U.S. FDA-regulated device product
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