Composition and Collection Feasibility of Gut Microbiota in Children With and Without Obesity
Studieoversigt
Status
Status
Betingelser
Betingelser
Undersøgelsestype
Undersøgelsestype
Tilmelding (Forventet)
Tilmelding
Kontakter og lokationer
Studiesteder
-
-
Illinois
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Peoria, Illinois, Forenede Stater, 61637
- University of Illinois College of Medicine at Peoria
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Deltagelseskriterier
Berettigelseskriterier
Berettigelseskriterier
Aldre berettiget til at studere
Tager imod sunde frivillige
Køn, der er berettiget til at studere
Prøveudtagningsmetode
Studiebefolkning
Beskrivelse
Inclusion Criteria:
1) patients aged 5-12 years
Exclusion Criteria:
- patient who have received either oral or parenteral antibiotics in the last 3 months
- patients who have a diagnosed immunodeficiency
- patients who are on medications that modulate the immune system including systemic prednisone and biologics
- patients who have a gastrointestinal condition which is known to alter the gut flora such as inflammatory bowel disease, chronic diarrhea, celiac disease and eosinophilic gastroenteritis diseases
- patients who have taken proton pump inhibitors in the last 3 months
- patients who have taken probiotics in the last 6 months.
Studieplan
Hvordan er undersøgelsen tilrettelagt?
Design detaljer
Antal grupper/kohorter
Kohorter og interventioner
Gruppe / kohorteGruppe / kohorte |
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Healthy Weight
Participants with BMI < 95th percentile
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Obese
Participants with BMI > or = 95th percentile
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Hvad måler undersøgelsen?
Primære resultatmål
Primære resultatmål
Resultatmål |
Foranstaltningsbeskrivelse |
Tidsramme |
|---|---|---|
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Microbiota Composition
Tidsramme: Over 2 years
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High-throughput sequencing targeting the 16S rRNA gene will be used to detect and identify bacteria in fecal samples.
DNA extraction and library preparation will be performed at the University of Illinois College of Medicine at Peoria, and libraries will be subjected to 16S rDNA sequencing (approximately 10k reads will be obtained per sample) on a MiSeq instrument.
Using 10k reads per sample provides stable patterns for human stool microbiota.
The 16S data will provide information about the presence and abundance of bacteria, and will be analyzed with Qiime, an open source bioinformatics package.
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Over 2 years
|
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Short Chain Fatty Acid Content
Tidsramme: Over 2 years
|
Gas Chromatography will be used to measure SCFA amounts, specifically acetate, butyrate, proprionate.
Preserved aliquot samples will be analyzed on Agilent GC/MS system (6890GC/5973 MS with 7683B autosampler) with gas chromatography performed on a ZB-WAX (30 m×0.32 mm I.D., 0.25um film thickness) capillary column (Phenomenex, Torrance, CA).
The inlet and MSD interface temperatures will both be 250°C, with the ion source temperature adjusted to 230°C.
The helium carrier gas will be kept at a constant flow rate of 3.2 ml/min.
The temperature program is: initial 2-min isothermal heating at 80°C, followed by an oven temperature increase of 20°C/min to 110°C, then 10°C/min to 130°C, and then 35°C/min to 255°C.
Mass spectra will again be recorded in the m/z 50-300 scanning range.
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Over 2 years
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Specimen Quality
Tidsramme: Over 2 years
|
Technical factors, which may affect microbial compositions (such as times of specimen collection, home freezer storage removal, shipping, and arrival) will be recorded as independent variables.
To estimate and minimize the effect of technical variables, principal component analysis will be used and the study will follow the International Human Microbiome Standards
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Over 2 years
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Samarbejdspartnere og efterforskere
Sponsor
Sponsor
Datoer for undersøgelser
Studer store datoer
Studiestart (Faktiske)
Studiestart
Primær færdiggørelse (Faktiske)
Primær færdiggørelse
Studieafslutning (Forventet)
Studieafslutning
Datoer for studieregistrering
Først indsendt
Først indsendt
Først indsendt, der opfyldte QC-kriterier
Først indsendt, der opfyldte QC-kriterier
Først opslået (Faktiske)
Først opslået
Opdateringer af undersøgelsesjournaler
Sidste opdatering sendt (Faktiske)
Sidste opdatering sendt
Sidste opdatering indsendt, der opfyldte kvalitetskontrolkriterier
Sidste opdatering indsendt, der opfyldte kvalitetskontrolkriterier
Sidst verificeret
Sidst verificeret
Mere information
Begreber relateret til denne undersøgelse
Yderligere relevante MeSH-vilkår
Andre undersøgelses-id-numre
Andre undersøgelses-id-numre
- 1001223
Lægemiddel- og udstyrsoplysninger, undersøgelsesdokumenter
Studerer et amerikansk FDA-reguleret lægemiddelprodukt
Studerer et amerikansk FDA-reguleret enhedsprodukt
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