Analysis of the Dynamics of the Lung Microbiota During Acute Exacerbation of COPD Requiring Admission to Intensive Care Unit (ADMiRE)
Analysis of the Dynamics of the Lung Microbiota During Acute Exacerbation of COPD Requiring Admission to Intensive Care
Study Overview
Status
Status
Conditions
Conditions
Intervention / Treatment
Intervention / Treatment
Detailed Description
Chronic obstructive pulmonary disease (COPD) is a frequent cause of ICU admission. COPD exacerbations are a leading cause of lung function worsening and of morbimortality. Hospitalizations due to COPD exacerbations are highly expensive for health insurance system. Bacterial pulmonary microbiota has been shown to be correlated to the severity of COPD and to exacerbations. Nevertheless fungi and viruses which are full actors of pulmonary microbiota have not yet been investigated.
Our primary outcome will be the assessment of alpha and beta diversity dynamics of the whole pulmonary microbiota (bacteria, fungi and viruses) between COPD exacerbation and steady state.
This study will prospectively include 24 patients at ICU admission for COPD exacerbation with sputum sampling. Steady-state as defined during a 2 months-later visit will be studied with another sputum collection.
Study Type
Study Type
Enrollment (Anticipated)
Enrollment
Contacts and Locations
Study Contact
Study Contact
- Name: Didier GRUSON, MD/PhD
- Phone Number: +335 56 79 55 17
- Email: didier.gruson@chu-bordeaux.fr
Study Contact Backup
- Name: Renaud PREVEL, MD MSc
- Phone Number: +335 56 79 55 17
- Email: renaud.prevel@u-bordeaux.fr
Study Locations
-
-
-
Bordeaux, France, 33000
- University Hospital, Bordeaux
-
-
Participation Criteria
Eligibility Criteria
Eligibility Criteria
Ages Eligible for Study
Accepts Healthy Volunteers
Genders Eligible for Study
Sampling Method
Study Population
Description
Inclusion Criteria:
- Patient above 18 admitted in ICU
- Admitted for COPD exacerbation defined by sustained (> 2 days) worsening of respiratory symptoms considering Anthonisen's criteria with life-threatening condition.
- Needing mechanical ventilation (noninvasive ventilation or oro-tracheal intubation)
- COPD condition will be presumed according to patient's respiratory history or previous lung function testing
- Able to consent or with the patient's family consent
- Affiliated to a social insurance scheme
No inclusion Criteria:
- COPD patient admitted for another cause than respiratory failure
- person under tutorship or curatorship
- living further than 100 kilometers away from the ICU
- expected survival inferior to 1 week
Exclusion Criteria
- Lung function testing not consistent with COPD at steady-state visit
Study Plan
How is the study designed?
Design Details
Number of groups / cohorts
Cohorts and Interventions
Group / CohortGroup / Cohort |
Intervention / TreatmentIntervention / Treatment |
|---|---|
|
exacerbating COPD patients needing ICU admission
sputum collection
|
Analysis of Sputum collection
|
What is the study measuring?
Primary Outcome Measures
Primary Outcome Measures
Outcome Measure |
Measure Description |
Time Frame |
|---|---|---|
|
Number of differents types of cyto-bacteriological of sputum in Bacteriology
Time Frame: Day 0
|
After extraction of the DNA and sequencing, the obtained sequences allow a taxonomic assignment of the microorganisms.
The number of different taxonomic groups and the number of sequences within each taxonomic group to evaluate the α diversity through the coefficient developed by Shannon and the β diversity
|
Day 0
|
|
Number of differents types of Cyto-bacteriological of sputum in Mycology
Time Frame: Day 0
|
After extraction of the DNA and sequencing, the obtained sequences allow a taxonomic assignment of the microorganisms.
The number of different taxonomic groups and the number of sequences within each taxonomic group to evaluate the α diversity through the coefficient developed by Shannon and the β diversity.
|
Day 0
|
|
Number of differents types of Cyto-bacteriological of sputum in Virology
Time Frame: Day 0
|
After extraction of the RNA and sequencing, the obtained sequences allow a taxonomic assignment of the microorganisms.
The number of different taxonomic groups and the number of sequences within each taxonomic group to evaluate the α diversity and the β diversity.
|
Day 0
|
|
Number of differents types of Cyto-bacteriological of sputum in Bacteriology
Time Frame: Day 60
|
After extraction of the DNA and sequencing, the obtained sequences allow a taxonomic assignment of the microorganisms.
The number of different taxonomic groups and the number of sequences within each taxonomic group to evaluate the α diversity through the coefficient developed by Shannon and the β diversity
|
Day 60
|
|
Number of differents types of Cyto-bacteriological of sputum in Mycology
Time Frame: Day 60
|
After extraction of the DNA and sequencing, the obtained sequences allow a taxonomic assignment of the microorganisms.
The number of different taxonomic groups and the number of sequences within each taxonomic group to evaluate the α diversity through the coefficient developed by Shannon.
|
Day 60
|
|
Number of differents types of Cyto-bacteriological of sputum in Virology
Time Frame: Day 60
|
After extraction of the RNA and sequencing, the obtained sequences allow a taxonomic assignment of the microorganisms.
The number of different taxonomic groups and the number of sequences within each taxonomic group to evaluate the α diversity and the β diversity.
|
Day 60
|
Collaborators and Investigators
Sponsor
Sponsor
Investigators
Investigators
- Principal Investigator: Didier GRUSON, MD/PhD, Hospital University, Bordeaux
Study record dates
Study Major Dates
Study Start (Anticipated)
Study Start
Primary Completion (Anticipated)
Primary Completion
Study Completion (Anticipated)
Study Completion
Study Registration Dates
First Submitted
First Submitted
First Submitted That Met QC Criteria
First Submitted That Met QC Criteria
First Posted (Actual)
First Posted
Study Record Updates
Last Update Posted (Actual)
Last Update Posted
Last Update Submitted That Met QC Criteria
Last Update Submitted That Met QC Criteria
Last Verified
Last Verified
More Information
Terms related to this study
Additional Relevant MeSH Terms
Other Study ID Numbers
Other Study ID Numbers
- CHUBX 2018/17
Drug and device information, study documents
Studies a U.S. FDA-regulated drug product
Studies a U.S. FDA-regulated device product
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