Assessing the Dose Response of a Lead Fiber Snack Prototype (FDR)

Assessing the Dose Response of a Lead Fiber Snack Prototype on the Gut Microbiome and Host Metabolome and Proteome

Aim: To test the effects of a fiber-blend containing snack prototype in an escalating dose regimen (from 1 to 3 servings per day over a period of 6 weeks) on the configuration and gene content of the gut microbiota of overweight and obese participants (BMI 25-35 kg/m2), while consuming a controlled diet that contains quantities of saturated fats in the upper tertile and quantities of fruits and vegetables in the lower tertile of consumption in the NHANES database (high saturated fat-low fruit and vegetable; HiSF-LoFV). Changes in the representation of bacterial genes involved in carbohydrate utilization in the microbiomes of participants will be correlated with changes in plasma biomarkers at the end of each escalating dose phase by comparing features of their pre- vs post-treatment plasma proteomes and metabolomes.

Design: Participants will be asked to continue to consume their habitual diet (free diet phase) for 1 day prior to being provided with a HiSF-LoFV diet in the form of packed-out meals and snacks to consume for the following 62 days. Ten days after starting to consume the HiSF-LoFV diet, participants will supplement this diet with a fiber-blend containing snack (~10g fiber/serving) once daily for a total of 14 days; the energy contribution from the HiSF-LoFV diet will be reduced accordingly to maintain energy needs during this time and the remainder of the study. For the next 14 days, the diet will be supplemented with two of the same fiber-blend containing snacks per day, followed by 14 days in which the snacks will be consumed three times daily. Subsequently, a 'wash-out' phase of ten days in which the HiSF-LoFV diet is consumed without any of fiber snack supplementation will conclude the study. Stool, urine and blood will be sampled periodically throughout.

Study Overview

• Status: Completed
• Conditions: Microbiota; Gastrointestinal Microbiome
• Intervention / Treatment: Other: Controlled, high fat/low fiber diet background diet, sequentially supplemented with an escalating dose of a fiber-blend snack food.

• Study Type: Interventional
• Enrollment (Actual): 17
• Phase: Not Applicable

Contacts and Locations

Study Locations

• United States
  • Missouri
    • Saint Louis, Missouri, United States, 63110
      • Washington University School of Medicine

Participation Criteria

Eligibility Criteria

• Ages Eligible for Study: 16 years to 58 years (Adult)
• Accepts Healthy Volunteers: No
• Genders Eligible for Study: All

Description

Inclusion Criteria:

• BMI ≥25.0 and ≤35.0 kg/m2

Exclusion Criteria:

• Previous bariatric surgery
• Significant organ system dysfunction (e.g. diabetes, severe pulmonary, kidney, liver, or -cardiovascular disease)
• Cancer or cancer that has been in remission for less than 5 years
• Major psychiatric illness
• Inflammatory gastrointestinal disease
• Pregnant or lactating women
• Use of medications that are known to affect the study outcome measures
• Use of medications or supplements known to affect composition of the gut microbiota within the last 30 days (e.g. antibiotics)
• Bowel movements less than 3 times per week
• Vegans, vegetarians, and those with allergies, aversions, or sensitivities to foods provided in the study
• Persons that are not able to grant voluntary informed consent
• Persons who are unable or unwilling to follow the study protocol or who the research team deems not an appropriate candidate for the study.

Study Plan

How is the study designed?

Design Details

• Primary Purpose: Other
• Allocation: N/A
• Interventional Model: Sequential Assignment
• Masking: None (Open Label)

Number of Arms

1

Arms and Interventions

Participant Group / Arm

Intervention / Treatment

Experimental: Dietary Intervention; All participants will stay weight stable while undergoing 5 phases of a dietary intervention that lasts 62 days.

Other: Controlled, high fat/low fiber diet background diet, sequentially supplemented with an escalating dose of a fiber-blend snack food.; Phase 1: Participants will be provided with a high fat/low fiber diet in the form of packed out meals and snacks for 10 days in total (days 2-11 and days 54-63) Phase 2: Participants will be provided with the high fat/low fiber diet, plus 1 daily fiber-blend snack serving from days 12-25 Phase 3: Participants will receive 2 daily fiber-blend snack servings to supplement the high fat/low-fiber diet from days 26-39. Phase 4: Participants will receive 3 daily fiber-blend snack servings to supplement the high fat/low-fiber diet from days 40-53. Phase 5: Participants will return to the unsupplemented high fat/low fiber diet for days 54-63

What is the study measuring?

Primary Outcome Measures

Outcome Measure	Measure Description	Time Frame
Changes to the gut microbiota/microbiome	Changes to the gut microbiota/microbiome as a function of background diet and fiber dose escalation using culture independent methods. Investigators will use higher order singular value decomposition (HOSVD) to analyze changes in the gut microbiome - including the representation of carbohydrate-active enzyme genes (CAZymes), metabolic pathways and Amplicon Sequence Variants (ASVs) in shotgun sequencing datasets generated from fecal DNA collected at the beginning and end of each dose escalation phase.	Stool samples will be collected periodically from day 1 through the final day of the 63-day study
Changes in the plasma proteome/metabolome	Changes in the plasma proteome/metabolome (aptamer-based proteomics/mass spectrometry) as a function of fiber dose escalation and their correlation with features of the gut microbiome using cross-correlation singular value decomposition (CC-SVD).	Fasted blood draws will be collected at day 1, day 11, day 25, day 39, day 53, and day 63. Stool samples will be collected periodically from day 1 through the final day of the 63-day study
Change in plasma lipid profile	Changes in the plasma lipid profile as a function of background diet and fiber dose escalation as assessed by complete metabolic and lipid panels.	Fasted blood draws will be collected at screening, day 11, day 25, day 39, day 53, and day 63

Collaborators and Investigators

• Sponsor: Washington University School of Medicine

Publications and helpful links

General Publications

• Patnode ML, Beller ZW, Han ND, Cheng J, Peters SL, Terrapon N, Henrissat B, Le Gall S, Saulnier L, Hayashi DK, Meynier A, Vinoy S, Giannone RJ, Hettich RL, Gordon JI. Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans. Cell. 2019 Sep 19;179(1):59-73.e13. doi: 10.1016/j.cell.2019.08.011.

Study record dates

Study Major Dates

• Study Start (Actual): February 22, 2021
• Primary Completion (Actual): November 15, 2021
• Study Completion (Actual): November 15, 2021

Study Registration Dates

• First Submitted: November 9, 2020
• First Submitted That Met QC Criteria: January 25, 2021
• First Posted (Actual): January 29, 2021

Study Record Updates

• Last Update Posted (Actual): March 9, 2022
• Last Update Submitted That Met QC Criteria: March 7, 2022
• Last Verified: March 1, 2022

More Information

Terms related to this study

• Other Study ID Numbers: 202010046

Drug and device information, study documents

• Studies a U.S. FDA-regulated drug product: No
• Studies a U.S. FDA-regulated device product: No