- ICH GCP
- US Clinical Trials Registry
- Clinical Trial NCT04261582
Genetics and Genomics of Aspirin Exacerbated Respiratory Disease (AERD) (AERD)
August 30, 2021 updated by: National Jewish Health
Aspirin Exacerbated Respiratory Disease (AERD) is a relatively homogeneous disease characterized by adult-onset severe asthma, development of non-cancerous growths in the nasal canal (i.e.
nasal polyps) and aspirin allergy.
The cause of AERD is unknown, although likely results from environmental insults in combination with genetic susceptibility.
AERD disease homogeneity increases the possibility of discovering narrowly-defined genetic contributors, and makes it an ideal population to study the genetic and epigenetic changes that cause asthma.
Researchers recently discovered that gene expression of epithelial growth and repair (EGR) genes are substantially decreased in bronchial airway epithelial cells of severe asthmatics compared to less severe asthmatics and healthy controls.
This new finding indicates that epithelial integrity and related processes may be of primary importance to the development of severe asthma, and potentially the severe asthma subtype, AERD.
This finding was later supported in a subsequent lab model, which showed that blocking a central epithelial repair and differentiation gene, human epidermal growth factor receptor 2 (ERBB2), decreased healing time of bronchial epithelial cells after injury.
Thus, the objective of the proposed study is to determine whether EGR gene are also down-regulated in AERD, a homogeneous severe asthma subtype.
As an extension, the researchers will also determine whether genetic mutations and/or epigenetic changes relate to and potentially explain this down-regulation of EGR genes.
Specifically, the researchers plan to obtain gene expression of freshly brushed nasal airway epithelial cells of 140 AERD patients, 70 non-aspirin sensitive asthma patients, and 35 healthy controls, noting that nasal epithelial gene expression has recently been shown to mirror lung epithelial changes in asthmatic airways.
Swabbing the nasal canal for epithelial cells allows to evaluate airway epithelial cell gene expression non-invasively.
Our experimental design contrasts AERD gene expression profiles against healthy controls, and determines whether EGR genes are depressed in AERD relative to health controls.
As a corollary, the researchers look to discover an AERD-specific gene expression profile which may one-day aid in diagnosis and expand current knowledge of disease mechanisms.
As an extension, the researchers will correlate gene expression changes, specifically any finding of down-regulated EGR genes, with methylation changes (i.e.
epigenetic changes) and genetic mutations.
Study Overview
Status
Suspended
Study Type
Observational
Enrollment (Anticipated)
245
Contacts and Locations
This section provides the contact details for those conducting the study, and information on where this study is being conducted.
Study Locations
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Colorado
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Denver, Colorado, United States, 80206
- National Jewish Health
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Participation Criteria
Researchers look for people who fit a certain description, called eligibility criteria. Some examples of these criteria are a person's general health condition or prior treatments.
Eligibility Criteria
Ages Eligible for Study
18 years to 75 years (Adult, Older Adult)
Accepts Healthy Volunteers
No
Genders Eligible for Study
All
Sampling Method
Non-Probability Sample
Study Population
AERD participants, a subtype of severe asthma characterized by inflammation of the nasal cavity, development of non-cancerous growths, and an allergy to aspirin; 35 healthy control participants.
Populations will be recruited from clinic visits or clinical research inquiries, all volunteers.
Description
Inclusion Criteria:
- Physician diagnosis of asthma
- Physician diagnosis of chronic nasal disease featuring nasal polyps
- Sensitivity to aspirin verified by an aspirin provocative challenge in clinic
- Healthy control participant
Exclusion Criteria:
- Active smoking
- Pregnancy
- History of greater than or equal to 10 pack-years of smoking
- Any significant comorbid conditions that could inadvertently interfere with study results
- Conditions that require bursts of oral corticosteroids
- Other significant lung diseases
- Other disease in the view of the investigator prohibits participation in the study
Study Plan
This section provides details of the study plan, including how the study is designed and what the study is measuring.
How is the study designed?
Design Details
- Observational Models: Case-Control
- Time Perspectives: Prospective
Cohorts and Interventions
Group / Cohort |
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AERD participants
Participants with aspirin exacerbated respiratory disease.
Adults with aspirin allergy, nasal polyps and adult-onset severe asthma.
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Healthy controls
Healthy participants that do not have asthma.
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Non-aspirin sensitive asthma participants
Participants with asthma, but that do not have a sensitivity to aspirin.
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What is the study measuring?
Primary Outcome Measures
Outcome Measure |
Measure Description |
Time Frame |
---|---|---|
Evaluation of EGR related gene expression in AERD
Time Frame: Through study completion, 3 years
|
Researchers will obtain global gene expression of freshly brushed nasal airway epithelial cells of AERD patients, non-aspirin sensitive asthma patients, and healthy patients using nasal swab samples and running RNAseq on the collected cells.
Researchers will contrast AERD gene profiles against non-aspirin sensitive asthma patients and healthy patients and determine whether down-regulation of EGR genes is found in AERD.
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Through study completion, 3 years
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Secondary Outcome Measures
Outcome Measure |
Measure Description |
Time Frame |
---|---|---|
Relation of EGR gene expression to epigenetic gene methylation
Time Frame: Through study completion, 3 years
|
To determine whether whole genome methylation profiling is altered in association with down-regulated EGR genes.
Researchers will obtain complementary whole-genome methylation profiles of the study participants and will evaluate whether down-regulated EGR genes in AERD patients are associated with methylation differences by a composite analysis integrating expression and epigenetic data.
MethylMix R software program will be used to identify methylation changes associated with gene expression changes.
MethylMix integrates DNA methylation from normal and disease samples with matched gene expression.
In summary, MethylMix defines hyper and hypomethylated genes by comparing methylation values of disease tissue vs. normal.
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Through study completion, 3 years
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Influence of Genetic variation on EGR related gene expression
Time Frame: Through study completion, 3 years
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To determine whether genetic mutations associate with down-regulated EGR gene expression in AERD patients.
We will obtain genotypes on these same study participants and evaluate whether down-regulated EGR genes are associated with mutations by a composite analysis integrating expression and genotypes.
The Affymetrix genotyping workflow consists of 4 steps; first 3 steps use a set of stand-alone software packages, and the 4th step using R package SNPolisher.
Sample QC will be evaluated by Dish-QC statistic, retaining samples with default Dish-QC > 82%.
Genotyped samples with a call rate lower than default value of 97% will be excluded.
Platewise QC will be evaluated by manually calculating 'Plate Pass Rate' and 'Average Plate Call Rate' statistics, with default cutoff values of 95 and 99%.
Genotyping step will be rerun for samples passing quality criteria.
SNPolisher will evaluate quality of the signal and classify each SNP probe.
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Through study completion, 3 years
|
Collaborators and Investigators
This is where you will find people and organizations involved with this study.
Sponsor
Collaborators
Study record dates
These dates track the progress of study record and summary results submissions to ClinicalTrials.gov. Study records and reported results are reviewed by the National Library of Medicine (NLM) to make sure they meet specific quality control standards before being posted on the public website.
Study Major Dates
Study Start (Actual)
November 6, 2018
Primary Completion (Anticipated)
April 1, 2022
Study Completion (Anticipated)
April 1, 2022
Study Registration Dates
First Submitted
December 5, 2019
First Submitted That Met QC Criteria
February 5, 2020
First Posted (Actual)
February 10, 2020
Study Record Updates
Last Update Posted (Actual)
September 1, 2021
Last Update Submitted That Met QC Criteria
August 30, 2021
Last Verified
August 1, 2021
More Information
Terms related to this study
Additional Relevant MeSH Terms
Other Study ID Numbers
- HS-3200sIRB
Drug and device information, study documents
Studies a U.S. FDA-regulated drug product
No
Studies a U.S. FDA-regulated device product
No
This information was retrieved directly from the website clinicaltrials.gov without any changes. If you have any requests to change, remove or update your study details, please contact register@clinicaltrials.gov. As soon as a change is implemented on clinicaltrials.gov, this will be updated automatically on our website as well.
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