- ICH GCP
- US Clinical Trials Registry
- Clinical Trial NCT06276348
Newborn Genomic Sequencing Pilot Study
Newborn Genomic Sequencing (BeginNGS) Prospective Pilot Study
The goal of this clinical trial is to test a new method for newborn screening using whole genome sequencing, called BeginNGS. Newborns who are not suspected of having genetic diseases and who are admitted to the NICU at Rady Children's Hospital, San Diego, will be enrolled. The main questions this study aims to answer are:
- What is the diagnostic yield of diagnostic whole genome sequencing (DWGS) in this population?
- What is the diagnostic sensitivity and specificity of BeginNGS and whole exome sequencing (WES) as compared to DWGS?
- What are the potential issues related to implementing DWGS in this population?
Enrolled newborns will have a blood sample taken and will receive three tests:
- DWGS
- BeginNGS
- WES
Study Overview
Status
Conditions
Intervention / Treatment
Detailed Description
Study Type
Enrollment (Actual)
Phase
- Not Applicable
Contacts and Locations
Study Contact
- Name: Lauren Olsen, MSN
- Phone Number: 228456 858-576-1700
- Email: lolsen1@rchsd.org
Study Locations
-
-
California
-
San Diego, California, United States, 92123
- Rady Children's Hospital San Diego
-
-
Participation Criteria
Eligibility Criteria
Ages Eligible for Study
- Child
Accepts Healthy Volunteers
Description
Inclusion Criteria:
- Neonates less than or equal to 10 days old who are admitted to the RCHSD NICU.
Exclusion Criteria:
- Neonates who have enrolled in another clinical study at Rady Children's Institute for Genomic Medicine or in whom DWGS has been ordered or is being considered.
- Neonates whose mother is less than 18 years of age.
- Neonates who are wards of the state.
- Neonates whose parent/legal guardian is unable to provide consent.
Study Plan
How is the study designed?
Design Details
- Primary Purpose: Screening
- Allocation: N/A
- Interventional Model: Single Group Assignment
- Masking: None (Open Label)
Arms and Interventions
Participant Group / Arm |
Intervention / Treatment |
---|---|
Experimental: Enrollees
Enrolled infants will receive 3 tests (DWGS, BeginNGS, and WES).
DWGS will be performed in a standard manner.
BeginNGS and WES will be performed in a batch after completion of enrollment.
The diagnostic sensitivity and specificity of BeginNGS and WES will be compared to DWGS (a standard clinical test compliant with the Clinical Laboratory Improvement Amendments Act).
|
Standard diagnostic whole genome sequencing will be performed.
Genomic sequencing that screens for 434 genetic diseases.
Whole exome sequencing will be performed.
|
What is the study measuring?
Primary Outcome Measures
Outcome Measure |
Measure Description |
Time Frame |
---|---|---|
Proportion of enrolled infants who are diagnosed with a genetic disease by DWGS.
Time Frame: 18 months
|
Proportion
|
18 months
|
Secondary Outcome Measures
Outcome Measure |
Measure Description |
Time Frame |
---|---|---|
Proportion of enrolled infants who are identified with a genetic disease by BeginNGS.
Time Frame: 18 months
|
Proportion
|
18 months
|
Proportion of enrolled infants who are identified with a genetic disease by WES.
Time Frame: 18 months
|
Proportion
|
18 months
|
Proportion of enrolled infants who have a positive standard NBS test.
Time Frame: 18 months
|
Proportion
|
18 months
|
Proportion of parents approached who agree to participate in the study.
Time Frame: 18 months
|
Proportion
|
18 months
|
Parental reasons for refusal.
Time Frame: 18 months
|
Questionnaire
|
18 months
|
Time from sample arriving in lab to return of DWGS results.
Time Frame: 18 months
|
Time (days)
|
18 months
|
Time from birth to return of DWGS results.
Time Frame: 18 months
|
Time (days)
|
18 months
|
Results of confirmatory testing if BeginNGS or WES identifies a diagnostic finding not reported by DWGS.
Time Frame: 18 months
|
Proportion of findings confirmed
|
18 months
|
Collaborators and Investigators
Investigators
- Principal Investigator: Stephen Kingsmore, MD DSc, Rady Children's Institute for Genomic Medicine
Study record dates
Study Major Dates
Study Start (Actual)
Primary Completion (Actual)
Study Completion (Estimated)
Study Registration Dates
First Submitted
First Submitted That Met QC Criteria
First Posted (Actual)
Study Record Updates
Last Update Posted (Estimated)
Last Update Submitted That Met QC Criteria
Last Verified
More Information
Terms related to this study
Additional Relevant MeSH Terms
Other Study ID Numbers
- 20226892
Drug and device information, study documents
Studies a U.S. FDA-regulated drug product
Studies a U.S. FDA-regulated device product
This information was retrieved directly from the website clinicaltrials.gov without any changes. If you have any requests to change, remove or update your study details, please contact register@clinicaltrials.gov. As soon as a change is implemented on clinicaltrials.gov, this will be updated automatically on our website as well.
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